Eublepharis macularius (Leopard gecko): 129325055
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Entry
129325055 CDS
T09084
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129325055 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emc03019
]
129325055 (PATL1)
Messenger RNA biogenesis [BR:
emc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129325055 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
129325055 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
129325055
NCBI-ProteinID:
XP_054828537
UniProt:
A0AA97IZL8
LinkDB
All DBs
Position
2:148198806..148222292
Genome browser
AA seq
766 aa
AA seq
DB search
MFRYQSLEDCPLDDEEAFQTLADEDEDIDQFNDDTFGAGAVDDDWQEAHERLAELEEKPA
SSGEQGDQGVTDEMDLLGDHEENLAERLSKLVIDNELEDPAIMQAVQTQPLVQQPGGLNS
SIWDGPSVLRRITGPLLTQEVPSVSVLEYALPQRPPQAREEEQDVSERALPRRSSSPVIG
SPPVRVVPIGTPPKQPTMPNFNQQILCPKPVHIRVPIQQRYPSPFSERMSPNQLCNVTNS
SLLGHPFPPTVTPVLTHLQRAQLLGGAQAGRMSPSQFARISGLVGSPLASMNPKLLQGRV
GQMMPPASGFRAFFGAPPPPAPPSQHHSPCPGAHLQNLRPQPQMFRPDTTHLHPQHRRLL
HQRQQQNRNQHRSLNGSAGDRGSQRNSHQEQIRKDPYANLMLQREKDWVSKIQMMQLQST
DPYLDDFYYQNYFQKLEKLSSAEEMHGDGPKKERTKLITPQVAKLEHAYKPVQFEGSLGK
LTVSSVNNPRKMIDAVVTLRGEEDETKEKQVRDKRRQTLFTIEKTYSLLLDVEDYERRYL
LSLEGDRLALMEERKQKICDMYDNLRGKMPNQERPSDDPFVQTMCIRKGKRLVARILPFL
SAEQAADILMATARNLPFLIKKDAQDEVLPCLLRPFSLVLYHLPLGTVAGILQQLMNLPQ
SATVPASANLHLTAVLQNKFGLSLLFLVLSRGEELQSADSALELTQDNQWTELMFMATRE
LLRIPQAALAKPVSTPSNLLSLFSRYVDQQKLNVLETKLQLIQGIR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctaccagtctctagaggattgccctttggatgatgaggaagcctttcagacc
ttggcagatgaagatgaagatattgaccagttcaatgatgacacatttggagctggtgca
gttgatgatgactggcaggaagcacatgaacgactggcagagttggaagagaaacctgca
tcctcaggagagcaaggggatcagggagtcactgatgagatggacctgttgggagaccat
gaagagaacctggcagagaggttgagcaagctggtgattgataatgagctggaagaccca
gctatcatgcaggctgtgcaaacccagcccctggtacagcagccaggtggcctcaactca
agtatctgggatggcccttcagttctcaggcgcattacaggaccccttctcactcaggag
gtcccctctgtgtctgtgctggagtatgctctaccacagaggcctccacaggctcgagag
gaggagcaggatgtctcagaacgtgcattacccaggcgatcatcgtcgccggtcattggc
agccctcctgtcagagttgttcctattgggacaccccctaagcagcccaccatgcccaac
tttaaccagcagatcctgtgtccaaagcctgttcatatcagagtacccattcagcagcgt
tacccaagtcccttcagtgagaggatgtctccaaaccaactctgcaatgtcacgaactct
tccctcctgggccatccattccctcccactgttactcctgttctcacccacctccaaaga
gcacagctgctaggaggagcacaggcaggtagaatgtctcccagccagtttgcccggatc
tctggacttgttggcagccctcttgcatctatgaaccccaagctacttcagggccgggtt
gggcagatgatgcctccagccagtggatttcgtgccttctttggggcaccacctccacct
gcaccaccatcacaacaccactccccatgtcctggagcccacttgcagaatttaaggcct
cagccgcaaatgttcaggcccgatacaacccaccttcaccctcagcaccggcgactcttg
caccagcggcagcagcagaacaggaatcagcaccggagtctaaatggctcagcaggggac
cgagggagccagcggaatagccatcaggagcagatacggaaggacccatatgccaatctc
atgctgcagcgggagaaggactgggtgtccaagatccaaatgatgcaactgcagagcact
gatccatacttggatgacttctactatcagaattattttcagaagctggaaaaattatct
tcagcagaggagatgcatggtgatggccctaaaaaggagcgtaccaaactaatcacccca
caagtggccaagttagaacatgcctacaagccagtgcagtttgaaggctccctgggcaag
ctcacagtgtccagtgtgaataatccccgcaaaatgattgatgctgtggtgacactaaga
ggtgaagaagatgagacaaaagagaagcaggttcgtgataagaggcgtcagactctcttt
actattgaaaagacgtacagccttctcctggatgtggaggattacgagcggcgctacctc
ttaagtctggagggtgataggctggccttgatggaggagagaaagcagaagatctgtgac
atgtatgacaatctgagagggaaaatgcccaaccaggaaaggccaagtgatgaccctttt
gtgcagaccatgtgtattcggaaaggaaagcgtcttgttgcccggatcctccccttcctg
tccgctgagcaggcagctgacatacttatggcaacagcccggaacttgccctttctaata
aagaaagatgctcaggatgaggtgctaccatgcctgttgaggcccttctctctcgttctt
tatcatcttccactggggactgttgccggcatcctgcagcagctaatgaacctacctcag
agcgcaacagtgccagcatctgccaatctgcacctcaccgctgtgctccagaataagttt
ggcctctccctgttgttcttggtcttgagccgtggggaggaattgcagagtgctgattct
gctttggagcttacccaggacaaccagtggacggagctgatgttcatggcaaccagagag
cttcttcggatccctcaggcagccttggccaaaccagtgtctaccccttctaatctttta
tctctcttctctcgctatgttgatcagcagaagctgaatgtgctagagacaaagttgcag
ttgattcaaggaatacggtag
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