Eublepharis macularius (Leopard gecko): 129325167
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Entry
129325167 CDS
T09084
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129325167 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
emc03041
]
129325167 (SF3B1)
03036 Chromosome and associated proteins [BR:
emc03036
]
129325167 (SF3B1)
Spliceosome [BR:
emc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
129325167 (SF3B1)
Complex B
129325167 (SF3B1)
Complex C
U2 SnRNP specific factors
129325167 (SF3B1)
Chromosome and associated proteins [BR:
emc03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
129325167 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
129325167
NCBI-ProteinID:
XP_054828714
UniProt:
A0AA97J062
LinkDB
All DBs
Position
2:218349741..218383839
Genome browser
AA seq
1301 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKVALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYSSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKN
RRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYRVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQGLFHPARKVRD
VYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYVL
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagacccacgaagatattgaagcacagattcgagagattcaaggc
aaaaaggttgctcttgatgaagctcaaggagtcggtcttgactccacaggatactacgat
caagagatctatggcggaagtgacagccggtttgctggatatgtaacttcaattgccgca
actgaattagaggatgatgatgatgactactcttcaacaagcttgcttggccagaagaag
ccagggtaccatgccccagtggcattgcttaatgatataccacagtcaacagaacagtat
gatccatttgctgaacatcgtccacaaaagatcgcggatcgagaagatgaatacaaaaat
cgcaggcggatgatgataatttcccccgagcgtcttgatccttttgcagatggagggaag
acacctgaccctaaaatgaatgccagaacatacatggatgtaatgcgtgagcaacattta
acgaaagaagagagggagattaggcagcaactagcagaaaaggctaaggcgggtgaactt
aaagtcgtcaatggtgcagcatcccagcctccatccaaacgtaagcggcgttgggatcag
actgccgaccagactcctggggccacaccaaagaaactctcgagctgggatcaagctgag
acccctgggcatacaccatcactgcgatgggatgaaacgcctggccgtgcaaagggcagc
gagacacctggagcaacccctggatcgaaaatatgggatccaactcccagtcacacacca
gcaggagctgcaacgcctggacgcgacacacctggtcacgcaaccccaggccatggaggt
gccacttccagtgcacggaaaaatcgatgggatgagactccaaaaacagaaagagatact
cctggtcatgggagtggttgggctgaaacgccccgcacggatcggggtggcgactccata
ggtgaaacacccacccctggagcaagtaaaagaaaatcacgttgggatgaaacacctgca
agccagatgggtggaagcactcccgttttaactcctggcaagacccctattggcacccca
gccatgaacatggccactcccacgccaggtcacataatgagcatgactcctgaacagctc
caagcatggcgatgggagagagaaatagatgagagaaatcggcccctttctgatgaagaa
ctggatgcgatgtttccggaaggataccgagttctccctcctccggccggttatgtccct
attcgtactccagctcgtaaactcacagcaacgcccacgcccctggggggaatgactgga
tttcacatgcagactgaagacaggactatgaagagtgtcaatgaccagccctcggggaat
cttcctttcctaaagccagatgacatacaatacttcgacaaattactggttgatgttgat
gaatcgacacttagtccggaagaacagaaagagagaaagattatgaaattgcttttgaag
attaaaaatggtactcctccgatgagaaaggccgctttgcgacagattactgataaagct
cgtgaatttggagctggaccactcttcaatcagattttacccctgctgatgtcgcctacc
cttgaagatcaagaacgccatttgcttgtcaaagttattgataggatcttgtacaaattg
gatgacttggttcgaccatatgtgcataagattcttgtggtcattgaacccctgctgatt
gatgaagactactatgccagagtggaaggcagagaaatcatttccaacttggctaaggcg
gctggtctggcaaccatgatctccaccatgcgacctgatatcgacaacatggatgagtat
gtgcgtaacacaacggcccgagcctttgctgttgtggcctctgctctgggcattccttct
ctgctgcccttcttgaaagccgtctgcaaaagcaagaagtcctggcaggccaggcacact
ggcatcaagatcgtgcaacagattgccattctcatgggttgtgccattttacctcatctc
cggagcctggttgaaatcattgagcatggcttggtggacgagcagcagaaggtccgcacc
atcagtgctttggctattgccgctttagctgaggcagccacgccctacggtattgagtca
tttgactctgtgctaaagcccctgtggaagggcatacgtcaacacaggggaaagggtctg
gctgcatttttgaaagccattggctatctgattcctctgatggatgctgagtatgccaat
tactataccagagaagtcatgttgatccttatcagagagttccagtcacctgatgaagaa
atgaaaaagattgtgttgaaggtggtaaagcagtgttgcggcacagatggtgttgaagca
aactacattaaaaccgagatccttcctccgtttttcaaacacttctggcagcacaggatg
gcactggacagaagaaattacagacagctggttgacacaactgtagagctggccaacaaa
gttggggcagcagaaattatttccaggatagttgatgacctgaaagatgaagctgagcag
tacagaaaaatggtcatggagaccattgagaagatcatggggaacctgggtgcagcggac
atcgatcacaagctggaggagcaacttattgatggcatcctgtatgccttccaagagcag
accaccgaggactctgtgatgttgaatggcttcggcacagtggttaatgctcttggcaag
agagtcaagccgtacctaccccagatctgtggtacagtcttgtggcgtctaaacaacaaa
tcggccaaagtacgacagcaggctgctgatctgatatctcgtactgcggttgtcatgaag
acgtgtcaagaggaaaaattgatggggcatttgggtgtggtgttgtatgaatacctgggt
gaagaatatcctgaagtattgggcagtatcctaggagcacttaaagccattgtgaatgtc
atcggaatgcacaagatgacgcctccaatcaaagacttgctgccaaggctgacgcctatc
ttgaagaacagacatgagaaagtgcaggagaattgtatcgacctggttggccgtattgct
gacaggggagcagaatatgtttctgccagggagtggatgaggatctgcttcgaactgctc
gagttgttaaaggcgcacaagaaagctattcgaagagcaactgtaaatacgtttggttat
atcgcaaaagctattggaccacacgatgtgctggcaacactgctgaataatttgaaagta
caagaaagacaaaatcgagtgtgcactacagttgccattgctattgtagctgaaacctgc
tcccctttcacagtcctgcctgcacttatgaatgaatatcgggttccagagctgaatgtt
cagaatggtgttttaaaatctctttccttcctctttgaatatattggggaaatgggaaag
gactacatctatgctgtaaccccgttgcttgaagatgctttaatggacagagaccttgtt
cataggcaaacagccagtgcagtggtacagcacatgtctcttggggtgtacggctttggc
tgcgaagactcgctgaatcacttgttaaattatgtgtggcctaatgtgtttgagacgtcg
cctcatgttattcaagcagtcatgggggcattggagggcctgagggtcgcaattggacct
tgccgaatgttgcagtattgtttacagggtttatttcaccctgcccgaaaagtcagagat
gtgtattggaagatctataactccatctatatcggctcacaggatgctctgatagcacat
tatccgcgaatctacaacgatgagaagaacacatacattcgttacgaacttgactacgtc
ttgtaa
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