Eublepharis macularius (Leopard gecko): 129327415
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Entry
129327415 CDS
T09084
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129327415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emc03019
]
129327415
03041 Spliceosome [BR:
emc03041
]
129327415
Messenger RNA biogenesis [BR:
emc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
129327415
Spliceosome [BR:
emc03041
]
Complex B
Other components
Prp19-related factors
129327415
Complex C
129327415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_19
TPR_12
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
RPN7
NRDE-2
CKAP2_C
TPR_1
LTN1_E3_ligase_6th
ATG1-like_MIT2
Motif
Other DBs
NCBI-GeneID:
129327415
NCBI-ProteinID:
XP_054832021
UniProt:
A0AA97KVG2
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Position
4:complement(44309161..44326844)
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AA seq
853 aa
AA seq
DB search
MPELETVLGKRELLFEEEDLQYEEEILRNPFSVKCWIRYIEFKQNSSKNVLNLIYERALK
ELPGSYKLWYNYLKQRRKQVKSRCVTDPSYEEVNNCHERALVFMHKMPRIWLDYCQFLMD
QCRITRTRRTFDRALRALPITQHHRIWPLYLKFVRLYPLPETAVRVYRRYLKLSPENAEE
YIEYLHSIDRLDEAAVRLAAVVNDERFVSKEGKSNYQLWHELCDLISQNPDKVKSLNVGA
IIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIQTVMTVRDFTQVFDSYAQF
EESMIAAKMETQSEMGREEEDDVDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHK
RVKLYEGKPREIINTYTEAVQTVDPFKATGKTHTLWVAFAKFYEVNGQIEDARTIFEKAN
KVNFKQVDELASVWCEYGEMELRHENYDQALRILRKATAIPAKKAEYFDSSEPVQNRVYK
SLKVWSMLADLEESLGTFKSTKAVYDRILDLRIATPQIIINYGLFLEEHSYFEESFKAYE
RGISLFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPQKYAKTIYLLYAKL
EEEYGLARHAMAVYERATQAVQPSEQYDMYNIYIKRAAEIYGVTHTRSIYEKAIEVLSDE
HAREMCLRFADMECKLGEIDRARAIYSYCSQMCDPRTTANFWQTWKEFEIRHGNEDTIRE
MLRIKRSVQATYNTQVNFMASQMLKVYSNSTGTVSDLAPGQSGMDDMKLLEQRAEQLAAE
AERDQPRAKEKILFVRSDASRSELAELSRQANPDEIDIDLDEDGNESEDNEPDEVQLEQK
SVPSAVFGGLRDD
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgccagagctggaaacggtgttggggaagcgcgagctcctctttgaggaagaagatctg
cagtatgaggaagagatcttgcggaatcccttctctgtcaaatgctggatccgttacatt
gaattcaagcagaattcttccaagaatgtcttgaatctaatctatgagagagctcttaaa
gagttgccaggcagctacaagctatggtataattaccttaagcagcggcggaaacaagtg
aagagcaggtgtgtcacggaccccagctatgaagaggtgaacaattgtcatgagcgggct
cttgtcttcatgcataagatgcctcggatatggctagattattgccagtttctcatggac
cagtgtcggatcacccgcacacgcaggacctttgaccgggcactccgggctctgcctatt
acacaacatcatcgcatctggccactctacctgaagtttgtgcgtctgtatccattacct
gagacagctgtacgggtctaccgcagatatctgaaactgagcccagagaacgcagaggaa
tatattgagtatctgcactccatcgaccggctggatgaggctgccgtccgccttgctgca
gtggtaaatgatgaacgctttgtctccaaggaagggaaatccaactatcagctgtggcat
gagctgtgtgacctcatctcacagaatccagacaaggtcaagtctcttaatgtgggggcc
atcatccggggtggcctgacccgtttcacagaccaactgggcaagctgtggtgttccctg
gcagactattacattcgcagtgggcattttgagaaggctcgagacgtgtatgaagaagcg
atacagacggtgatgacagtgcgggatttcactcaggtgtttgacagctacgcccagttt
gaggaaagtatgatcgctgctaagatggagacacagtctgagatgggccgtgaggaggaa
gatgacgtggacctggagctgcgcctggctcgtttcgagcagctgatcacacgccggccc
ctgctcctcaacagtgtcctgctgcgtcagaatcctcacaacgttcacgagtggcacaag
cgggtgaaactgtatgaaggcaaaccccgggagataatcaacacatacacagaagctgtg
cagactgttgacccttttaaagccactggaaagactcacaccctgtgggttgcgtttgcc
aagttctatgaagttaacggacagatagaagatgccagaaccatttttgaaaaggccaac
aaggtgaacttcaagcaagtggacgagttggccagcgtgtggtgcgagtatggcgagatg
gagttacgacacgagaattatgaccaggcactgcgcattctgcggaaagccacagctatc
ccggctaagaaggcagagtattttgattcctcggaacctgtgcagaaccgtgtatacaag
tccctcaaagtttggtccatgctggctgatctggaggaaagtctaggcaccttcaaatct
actaaagctgtgtatgaccgcattctggacctgcgcatcgccacccctcaaatcatcatt
aactatggtctcttcctggaagagcacagctacttcgaggaaagcttcaaggcatatgag
aggggcatctccttgttcaaatggccaaatgtatatgacatctggaacacctacctaact
aagttcattgaccgctatggtggcaagaagctggagcgtgctcgagacctctttgaacaa
gcactggatggctgtccccagaaatatgctaaaactatctacctgttgtatgccaagctg
gaggaagaatatgggctggcacgtcatgccatggcagtgtatgagcgggccactcaggct
gtgcagccctcagagcagtatgatatgtacaacatctacatcaagagagcagctgaaatc
tatggagtcacgcacacccgtagcatctatgagaaggccattgaggttctgtcagatgag
catgcccgggagatgtgtctccggtttgccgacatggagtgcaagcttggtgaaatagat
cgagctcgtgctatttactcctactgttcacagatgtgtgatccccggaccactgctaac
ttctggcagacatggaaggagtttgagatccggcatgggaatgaagacactatacgagag
atgctgcgcattaaacgaagcgtgcaggccacctacaatacccaagtcaacttcatggct
tcccagatgttgaaagtttacagcaactctacagggacagtgtctgacttagcacccggg
cagagtggcatggatgacatgaagcttttagagcagcgagcggagcagcttgcagctgaa
gcagagcgagatcagcctcgagctaaggagaagatcctgtttgtcaggagtgatgcatcc
cgtagtgagttggctgaactctcccgccaggccaaccctgatgagatagatattgacttg
gatgaagatggaaatgagagtgaggataatgagcctgacgaggtccagctggaacagaag
agtgtcccttctgctgtgtttggaggcctcagggatgactga
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