Eublepharis macularius (Leopard gecko): 129327665
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Entry
129327665 CDS
T09084
Symbol
DDX39B
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03013
Nucleocytoplasmic transport
emc03015
mRNA surveillance pathway
emc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129327665 (DDX39B)
09122 Translation
03013 Nucleocytoplasmic transport
129327665 (DDX39B)
03015 mRNA surveillance pathway
129327665 (DDX39B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emc03019
]
129327665 (DDX39B)
03041 Spliceosome [BR:
emc03041
]
129327665 (DDX39B)
Enzymes [BR:
emc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
129327665 (DDX39B)
Messenger RNA biogenesis [BR:
emc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
129327665 (DDX39B)
Spliceosome [BR:
emc03041
]
Complex C
Other components
EJC/TREX
129327665 (DDX39B)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
129327665 (DDX39B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
129327665
NCBI-ProteinID:
XP_054832392
UniProt:
A0AA97J799
LinkDB
All DBs
Position
4:complement(163328094..163336964)
Genome browser
AA seq
428 aa
AA seq
DB search
MTENDVDNELLDYEDDEVENQAAGEGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVPGQVSVLVMC
HTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
RNKSLNLKYIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaatgacgttgacaacgagcttttggattatgaggacgatgaggttgaaaac
caggcagcaggagaaggggtggatgtcccatccaagaaggacgtcaagggctcctatgtc
tccatccacagttctgggtttcgtgatttcttgctaaagccagagctgctgcgtgccatt
gttgactgtggttttgagcacccctcagaagtgcaacatgagtgtatcccgcaggccatc
ctgggcatggatgtcctctgccaggccaaatcgggcatgggcaagacggctgtcttcgtt
cttgctacactacagcagctagagccagtcccaggacaggtgtcggtgctggtgatgtgt
cacactcgtgagctggccttccaaatcagcaaggagtacgagcgcttctccaagtacatg
cccagtgtcaaggtgtcggtgttctttggaggcctgtccatcaagaaggatgaggaggtg
ctgaagaagaactgcccgcacattgtggtggggaccccgggccgcatcctggccttggcc
cgcaacaagagcctcaacctcaagtacatcaagcatttcatcctggacgaatgcgataag
atgctcgagcagctcgatatgcgtcgggatgtccaggagatcttccgcatgaccccgcat
gaaaagcaggtcatgatgttcagtgccaccctcagcaaggaaattcgccctgtgtgccgc
aaattcatgcaagaccctatggagatcttcgtggacgacgagaccaagctgacgctgcac
gggctgcagcagtactatgtcaaactgaaagacaacgagaagaaccgcaagctctttgac
ctgcttgatgtgctggagttcaatcaggtggtgatctttgtgaagtccgtgcaacgctgc
atagcattggctcagcttctggtggagcagaacttcccagcgattgccatacacagaggg
atgccccaggaggaaaggttgtcgcggtatcagcaattcaaggattttcagcgccgtatc
ttggtggccaccaatctttttggtcgtggcatggacatagagcgagtcaacattgccttc
aactatgacatgccggaggattcggacacctaccttcaccgggtggctcgtgctgggcgc
ttcgggacaaagggtctggccatcacttttgtgtcagatgagaatgatgctaagatcttg
aatgaagtgcaggaccgctttgaggtgaacattagcgagctgcctgacgagatcgacatc
tcttcttacattgaacagacccgataa
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integrated database retrieval system
