Eublepharis macularius (Leopard gecko): 129330796
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Entry
129330796 CDS
T09084
Symbol
LSM4
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4 isoform X1
KO
K12623
U6 snRNA-associated Sm-like protein LSm4
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03018
RNA degradation
emc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129330796 (LSM4)
09123 Folding, sorting and degradation
03018 RNA degradation
129330796 (LSM4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emc03019
]
129330796 (LSM4)
03041 Spliceosome [BR:
emc03041
]
129330796 (LSM4)
Messenger RNA biogenesis [BR:
emc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
129330796 (LSM4)
mRNA degradation factors
5'-3' decay
Lsm complex
129330796 (LSM4)
Spliceosome [BR:
emc03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
129330796 (LSM4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
129330796
NCBI-ProteinID:
XP_054836963
UniProt:
A0AA97JF17
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All DBs
Position
5:3505418..3527845
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AA seq
139 aa
AA seq
DB search
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQQKQQKGRGIGSAGRGVFGGRGRGGI
PGSGRGQQEKKPGRQPAKQ
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgcttcccctgtccttgctgaagacggcacagaaccaccccatgttggtggagctgaaa
aatggtgagacttacaatggtcacctggtgagttgtgacaactggatgaacatcaaccta
cgagaagtcatctgtacctccagggatggagacaagttctggaggatgcctgagtgctac
atccgaggcagcaccatcaagtacttgcgcatcccagacgagatcatcgacatggtgaaa
gaggaagtggtgtcaaaaggtcgtggccgtggcgggatgcagcagcagaagcaacagaag
gggcgtgggattggcagtgcaggacgaggggtgtttggaggccgtggccgaggcggaatc
cctgggagtggccgagggcaacaagagaagaagccagggaggcagccagcaaagcagtga
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