Eublepharis macularius (Leopard gecko): 129331919
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Entry
129331919 CDS
T09084
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc04382
Cornified envelope formation
emc04510
Focal adhesion
emc04512
ECM-receptor interaction
emc04518
Integrin signaling
emc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129331919 (COL4A4)
04518 Integrin signaling
129331919 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129331919 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
129331919 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
129331919 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
emc04147
]
129331919 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
emc00536
]
129331919 (COL4A4)
Exosome [BR:
emc04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
129331919 (COL4A4)
Glycosaminoglycan binding proteins [BR:
emc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129331919 (COL4A4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
129331919
NCBI-ProteinID:
XP_054838578
UniProt:
A0AA97L1Q6
LinkDB
All DBs
Position
6:43159763..43286453
Genome browser
AA seq
1710 aa
AA seq
DB search
MWNITVKSEPAEGPSPHVKTVNDEGSKSNELPRTESIKRIKLTNGIAWWLVILLSSLKPV
YGGGYYVNVGPCGGQDCSVCRCFPEKGSRGQPGQLGPQGPIGAVGPAGPIGFPGEKGQRG
EMGLPGPAGERGDKGPTGVPGFSGLDGMPGLPGPGGLRGKPGFDGCNGSKGEPGFPGEAG
HIGPIGSFGVPGQKGEKGYSINASKFIKGASGERGDPGRHGIPGPRGRRGPRGPPGYPGQ
PGSQGASGQPGLPGEQGNPGVGVKGQKGEPGDVGPPGSPGQPLLVGTPSSRLLKGEKGVK
GMPGLMGSKGLPGPKGELGSGKKGEKGILGFPGIRGSPGSYGSTGFPGNKGKPGISGFPG
QSGFPGIKGDLGEKGQPGPPGPPTPPLVGIKGIQGDPGDPGSCGDVGDIGLPGPTGIDGR
PGEPGASLPGSKGSLGIPGPQGARGEPGLPAVSETAPGRPGSPGLPGLSGPPGRQGLPGP
PGVACSGRGSPGQPGAKGQRGPSGKAGEKGAKGNPGNCSCGPGPCGLPGKPGLPGNPGRK
GEVGSPGKYGEKGDPGLPGAVGQPGLLGLPGSSGFSGEKGDKGDAFRIRIKGIKGHRGSH
GDPGLPGQNGVTGEDGDPGAPGEKGSQGDDGIAVSGDKGFPGPPGLPGPRGPTGPSGIGI
PGPHGIRGPPGDPGSPGIRGSPGPKGQKGDALRQATGYPGNPGPPGSQGSPGPKGSRGSS
GRPGPNGFDGPKGQPGKPGTLGSPGPEGVRGESGDPGEEGKSGSRLDGAPGLPGPPGPKS
QKGIPGDTSYGPPGIPGNRGLPGLPGLPGKRGDTGLPGLQGQPGTPGFPGAKGLRGRKGS
AGALGCPGSPGLTCDKGLQGPPGPPGYLGSPGLPGLKGYKGSQGDMGPPGPAGMKGTPGV
PGIPGPPGLPGLRGNIGLPGDDELQGLPGQKGSKGPQGMQGFPGLPGNQGEKGVPGVKGE
PGQTGPHGPPGECGFMGSKGERGLPGEDGCIIILAEKGQNGEPGLPGEEGLLGIQGDKGS
PGFKGSPGLPGRSALLQKGEPGDDGEIGFQGLPGPPGVPGLRGITGFQGQQGEQGAQGLP
GALGTPGLDGAKGPKGSRGEPAVHSGQPGKKGPPGNPGLPGLNGLPGVQGVPGIQGETGR
QGPKGLPGYPGTPGFPGTQGAAGLSGPPGDEGSPGLLGPPGFAGLPGSPGRKGPPGLPGI
DGLNGLQGQKGLPGPPGLSEVGPPGCVGEPGSKGNRGEPGLPGISLPGPPGDVGLLGPPG
KPGASGPAGPIGQPCENALPGLPGDQGPAGLDGIRGLPGQTGPPGKTIFVKGDPGDSGIP
GLPGVPGPPGNPGKKGIQGKQGRGGSKGPVGNPGPRGPPGAHGEPGDQGFQGPTGPLGPK
GDPGEPGKLDYSLCPKTPGPPGVLGQRGSPGSIGIPGPPGFPGPQGRKGEEGLLGLLGQN
GLPGPPGPLGDPGDKGEKGYPGLRGPPGQTGMPGPPGPETTTASGFLLVLHSQTDQEPLC
PEGMPKLWTGYSLLYLEGQEKAHNQDLGLAGSCLPVFSTMPFAYCNVNQVCYYASRNDKS
YWLSSAAPLPMMPISDEEIEPYISRCAVCEAPAQAVAIHSQDQSIPLCPLNWRSLWIGYS
FLMHTGSGDQGGGQSLMSTGSCLEDFRSAPFIECQGQRGTCHFFANEYSFWLMTVKPEWQ
FASPPLSGTLKNEQEQRRHIGRCQVCMKHG
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacatcactgtcaagtcagaacctgcagaagggccaagccctcatgttaaaacc
gtaaacgacgaaggctcaaaatcaaatgaattgccacgaacagagtctataaaaaggatt
aaacttacaaatggaattgcatggtggctggtaatattactttcttcactgaaaccagtt
tatgggggaggatactacgtaaatgttggaccttgtggtggacaggattgctcggtctgt
cggtgctttcctgaaaaaggctcaagaggtcagcctggacagctggggccccagggtcca
attggtgctgtgggtcctgcaggacccattggttttccaggagaaaaaggtcagagaggt
gagatgggtcttcctgggccagctggagaaagaggcgataagggtcctactggagttccc
ggattttcaggtttagatggtatgcctggattaccaggacctggaggactcagaggcaaa
cctggcttcgatggatgtaatggttcaaagggggaaccaggatttcctggagaggctggt
catattggaccaataggctcatttggtgttcctgggcaaaaaggagaaaaaggatattct
ataaatgcttccaagttcattaaaggggcttctggagaaagaggggatcctggacgacat
ggaatacctggacctagaggaagaaggggcccaagaggcccacctggatatccaggccaa
ccaggatcacagggtgcttctggtcaacctggtttaccaggtgaacagggaaatccaggt
gttggagtaaaaggacaaaaaggagagccgggtgatgtgggacctccgggatctcccggg
cagccgttattggttggaactccaagttctcgtctactaaagggagaaaagggtgtaaaa
ggaatgcctggattgatgggctctaaaggattgcctggccccaaaggtgaacttggaagt
ggaaagaagggtgaaaaggggattcttggctttcctggaatacgggggagtcctggttct
tatggatcaacaggttttccaggaaacaagggtaaaccaggaatttctggatttcctgga
caatctggctttccaggcataaagggggaccttggagaaaaggggcagccaggtccacca
gggcctccaacaccaccacttgttggaataaaaggtattcaaggagatcctggagaccct
ggatcttgtggagatgttggtgacattggattgccaggtccaacaggcatagatggaagg
cctggggaacctggagctagtctcccaggttccaaaggtagtttgggaataccaggtcct
caaggcgctcgtggtgaacctggtctccctgctgtatctgaaactgctccaggaagacca
ggatctccgggattaccaggtttatcaggaccaccaggacgccagggtttgcctgggcca
ccaggtgttgcttgcagtgggagagggtcccccggacaaccaggagctaaaggccaaagg
ggcccatcagggaaagcaggtgaaaaaggagcaaaaggcaatccaggcaattgttcatgt
ggtcctggtccctgtggactaccaggaaaaccaggtctacctggtaatcctggaagaaaa
ggagaagtcgggtcacctggaaaatatggagaaaagggtgacccaggtttacctggtgca
gttggacaaccaggtctcttaggactaccaggttcctctggattcagtggagaaaaggga
gataaaggtgatgcatttagaataagaatcaaagggataaagggacacagaggctctcat
ggtgaccctggacttccaggccagaatggggtgactggtgaggatggggatccaggagct
cctggtgaaaaaggatctcagggtgatgatggaattgctgtatcaggtgataagggattt
cctggccctccaggacttcctggcccaagagggcccacaggaccatcaggaataggaatc
ccaggtccacacggtatccgtggtccaccgggagatccaggaagccctggtataagagga
tcacctggccccaaaggacagaaaggggatgctcttcggcaggcaacaggatatcctgga
aatccaggcccacctggttctcaaggttctccaggtccaaaaggatcaagaggatcatct
ggtcgacctggtcctaatggttttgatggcccaaaaggccaaccgggcaaaccaggaaca
ttaggaagccctggtccagaaggtgtcaggggtgagtctggtgacccaggtgaagaaggt
aaaagtggttccaggctggatggtgccccaggattgccaggtcctcctgggcctaaaagt
cagaaaggtattccaggtgacaccagttatggtcctccaggaattccaggcaacagaggc
ctgccaggactaccaggtttgcctggcaaaagaggggacacaggccttcctgggcttcaa
ggacagcctggcacaccaggattcccaggagctaaaggacttagaggaagaaaaggttct
gctggagccctcggctgtcctggctcacctgggctgacttgtgacaaaggcttgcagggg
ccaccaggacctccaggctatttgggatcaccaggacttccaggtttaaaaggctacaaa
ggctcacaaggagatatgggaccacccggcccagctggaatgaaaggcaccccaggagtt
cctggaataccagggccacctggccttccaggcttaagaggaaatataggccttccaggg
gatgatgaattgcagggcctcccaggccaaaaagggagcaaaggaccccaaggtatgcaa
ggtttcccaggacttccgggaaatcaaggagagaagggagttcccggtgtaaaaggtgaa
ccaggacaaacaggcccacatggccctcctggggaatgtggatttatgggctccaaaggt
gaaagaggacttccaggtgaagatggctgtatcattatattggctgagaaaggacaaaac
ggagagccaggtcttcctggtgaagaaggtttacttgggatacagggtgacaaaggcagc
cctggatttaaaggcagcccaggactgccaggcagaagtgcacttctgcagaaaggtgaa
cctggtgatgatggggagattggtttccaagggctgccaggcccacctggggttccagga
ttgagaggaatcactggttttcaaggacagcagggggagcagggtgcacaaggattaccg
ggtgctctaggaacaccaggacttgatggagcaaaaggacctaaaggtagtagaggtgaa
ccagctgttcacagcggccagcctggtaagaaaggtcctccaggaaatccaggattgcca
ggactcaatggattaccaggtgttcaaggagtaccagggattcaaggggaaacaggaaga
cagggacccaaaggattacctggatacccaggaactcctggcttcccaggaactcaggga
gctgcaggactgtcaggacctccaggtgatgaaggtagtcctggtcttttgggacctcca
ggttttgcaggattacctggatccccaggtagaaaaggccctccgggattgcctggaata
gatggcttgaatggactacagggtcagaaaggcttaccaggacctccaggtttaagtgaa
gtggggcctccggggtgcgttggagagcctggatcaaaaggcaatagaggagaacctgga
ctgccaggaatttcccttccaggacccccaggagatgtgggcttgttagggccacctggc
aagccaggggcttctgggcctgcaggacctattggacaaccttgtgaaaatgcacttcct
gggcttccaggtgaccaaggccctgctggtttggatggcatcagaggccttcctggtcag
actggacccccgggaaagactatttttgttaaaggagatccaggtgactctgggatccct
ggcctacctggggttcctggtccacctgggaatccaggaaaaaaaggcattcaaggaaaa
caagggagaggaggctcaaaaggtccggtggggaaccctggaccacgggggcctcctggt
gcccatggggagcctggtgatcaaggctttcaaggaccaactggacctttgggtcccaaa
ggtgacccaggtgaacctggaaaacttgattactccttatgtcccaagactccagggcct
cccggagtattaggccaaagaggttcaccaggctccataggaattcctgggccgccaggt
tttcctggtccccaaggaagaaaaggagaagaagggttgttagggctgctgggccaaaat
ggcttgcctgggccacctggacctcttggtgatccaggtgacaagggagaaaaaggatac
ccagggcttcgaggtcctccaggccagactgggatgccagggccaccagggcctgaaaca
accactgctagtggattcttgcttgttctgcacagtcaaacagaccaagaaccactgtgt
ccggagggaatgccaaaattatggactgggtacagcctgctgtatcttgaaggacaggag
aaggcccataatcaagaccttggtctggctggatcttgtcttcctgtattcagcaccatg
ccttttgcctattgcaatgttaatcaggtctgctactacgcaagtagaaatgataaatct
tactggttgtcaagtgccgctcctttacccatgatgcccatctctgatgaagaaatagag
ccctacattagcaggtgtgctgtatgtgaagctcctgcccaagctgtagctatccatagt
caggatcaatccattcctctctgtccgctgaactggagaagtctttggataggctactca
tttttaatgcacactggatctggtgaccagggaggtggacaatctctcatgtcaactgga
agctgccttgaagatttcagatcagcaccctttattgagtgccagggtcagcgaggaaca
tgtcatttttttgcaaatgaatacagtttctggttgatgacagtaaagccagagtggcag
tttgcatcacctcctctctcagggacactgaaaaatgagcaagaacaacgcaggcatata
ggcaggtgccaggtctgcatgaaacatggataa
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