Eublepharis macularius (Leopard gecko): 129333832
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Entry
129333832 CDS
T09084
Symbol
MSH6
Name
(RefSeq) DNA mismatch repair protein Msh6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
129333832 (MSH6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emc03400
]
129333832 (MSH6)
DNA repair and recombination proteins [BR:
emc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
129333832 (MSH6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Motif
Other DBs
NCBI-GeneID:
129333832
NCBI-ProteinID:
XP_054841715
UniProt:
A0AA97L407
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Position
1:207181971..207214186
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AA seq
1350 aa
AA seq
DB search
MSRQSSLLTFFPKASAAQNNPPPAENDDGDGGGNSPNPGSAGAKSQSGSRGQRRAMAVAA
AAASLVPAAESVLSELSPGDLVWAKLEGYPWWPCLVYNHPTEGTFVRGRGRSARIHVQFF
DDDPSRGWVGVKYIKPYTGSTGRETQRGGMFYSSKPEIKKAMELADAALGKDKSDRLSLA
VCDKPSESEEEDEDEEMEQISDEGEDFDKAEAGKRNKRTAGRQQPAGRPKRRRVVMDSDT
DNEGSDMEFKPEEVSSDEVSNGGGDSEASEFEANPKKEAENPVKSRNKQTQEKISKPPQK
EIVKNDPPVTPRREINLSAEIKYKLTSFTASECFDYQPSLNGGGGGDDANPTVWEHDKID
WLQDDKRKDGCRRRKNDVDYDPGTLFVPADYLANCTPGMRKWWEMKSQNFDCVIFYKVGK
FYELYHMDAVVGVKELGLVFMKGTWAHSGFPEIAFDRFSSVLVQKGYKVVRVEQMETPEM
MEARCKSLAHPTKFDRVVRREICRIITKGTQTYSILDGDLTEDQNRYLLCVKEKVADSTG
LHRIYGVCFVDTTVGKFFVGQFLDDRHCSRFRTLLAHYTPVQILFERGNPSAETQKILKG
FLSSTVQEALASGSQFWNAAKTLKTLIEGDYFEGQENVSGRLVLPPVIRAMTAESDSLGL
TPGENSELALCALGSCVYYLKKCIIDQELLSMADFEEYVPVDVHLTKTNASSSIFAKTSQ
RMVLDGVTLANLEILHNGTTGSVEGSLLEKLDMCCTPFGKRLLKQWLCAPLCNPAAINDR
LDAVEDLLAEAAKMSEIRDLLKQLPDLEKHLGKIHSIGSSFKNQNHPNNRAIMYEEMRYS
KKKIVDFLSTLEGFKIILEIISILEDIVDGFKSKTLKQIAMVKSKNPAGCFPDLKTELER
WDTSFDHNAARRTGVINPQTGFDSDYDKALQDINDVEERLRQYMEKQRKRLGCKAMMYWG
AGKNRYQMEIAESALPHNLPDEYVLKSSRKGYKRYWTKDIEKMLMEIVNAEERRDAAQKD
CMKRLFYNFDKNSKDWRTAVECIAVLDVLQCLAQYSQGCDGPLCRPVILLPEKNTPPFLE
LRSSRHPCITKTFFGDDFIPNDILIGVKGKEPGSWTDSHCVLVTGPNMGGKSTLMRQAGL
LVIMAQVGFFVPAESCRITPVDRVFTRLGASDRILSGESTFFVELSETSSILQHATEHSF
VLMDELGRGTATFDGTAIASAVVKELSESIKCRTMFSTHYHSLVEDYFHSPSVQLGHMAC
MVENETDDPSQETITFLYKFIKGACPKSYGFNAARLADIPEEIIRKGHKKAKDFEKSTLS
LRLFRNLCLIAEGAPTVVDDLHKQLTMLCK
NT seq
4053 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgtcagagctccctcctcactttcttccccaaggcttccgccgcgcaaaacaac
ccgccgccggccgagaacgatgatggggatggcggcgggaactcgcccaacccaggctcc
gccggggcgaaatctcaaagcggttctcggggccaacggagggcaatggcggtggcagcc
gcagcggcatcgttggtccccgctgccgagagtgtcctctctgaactttcacctggtgat
ttggtatgggccaaacttgaaggttacccttggtggccatgccttgtgtacaaccatcca
actgaagggacatttgtcagaggaagaggaagatctgctcgcatccatgtacagtttttt
gatgatgatccgtcgagaggttgggttggtgttaaatacataaaaccatatacaggttct
acaggccgggaaacacagaggggaggtatgttttacagctcaaagcctgaaattaaaaaa
gcaatggaactggcagatgctgctttgggaaaagataaatctgaccgacttagtttggct
gtgtgtgacaaaccttcagaaagtgaggaggaagatgaagatgaagagatggagcagata
agtgatgagggtgaagattttgacaaagcagaagcagggaaaagaaataaaaggacagct
ggacgacagcaacctgctggaagacccaaaaggagaagagtggtcatggattcagatact
gacaatgaaggttcagacatggagtttaagccagaagaagtcagcagtgatgaagtcagc
aatggaggaggggacagtgaagcttctgaatttgaggctaatccaaaaaaggaagcagaa
aatcccgtaaaatcccgtaataaacaaactcaggaaaagataagcaaaccacctcagaag
gaaatcgttaaaaatgaccctcctgttactcccagaagagaaattaatctttctgctgag
atcaagtataagctaacctctttcacagcttctgaatgctttgattatcagccaagcctt
aatggaggaggaggaggagatgatgccaacccaactgtgtgggaacatgataaaattgat
tggctgcaggatgataaaagaaaagatggctgtaggagaaggaaaaatgatgtggattat
gatccaggcacactgtttgtgccagcagattatctggccaactgcactccagggatgcgg
aagtggtgggagatgaagagtcagaattttgactgtgtgatattctacaaagttggaaag
ttttatgagctgtatcacatggatgccgttgttggagttaaagagctgggactggtgttc
atgaaaggcacttgggcccattcaggcttcccagaaatagcttttgacagattctccagt
gtcttagtccagaaaggttataaagttgtccgtgttgagcagatggagacgcctgaaatg
atggaagcgcgttgtaaatctttggctcatccaacaaaatttgacagggttgtgcggaga
gaaatatgcaggatcattaccaaagggacacaaacctacagtattctggatggtgacctt
acagaagaccaaaacagatacctcctgtgtgtaaaagaaaaagttgctgattctacaggc
ctccatcgtatttatggagtatgctttgttgacacaacagtgggcaaattctttgtgggg
cagttcttagatgatcgccattgctcaaggtttagaactctcttggctcattatactcca
gtgcagatactttttgagagagggaatccctctgcagaaacacaaaagatactcaaaggc
tttctgtcttctactgtgcaagaggccttggcttctggttctcagttctggaatgcagcc
aaaacattaaaaactttaattgagggagactactttgaaggccaggaaaatgttagtggt
aggcttgttcttcctccagtaatcagagccatgactgcagaaagtgactcgcttggactt
acaccgggggaaaacagtgagttagcattgtgtgctcttggtagctgtgtctactacctt
aaaaaatgtattattgaccaggagctattatcaatggcagattttgaagaatatgttcct
gtggatgttcatcttacaaaaacaaatgcatcaagtagtatctttgctaaaactagtcag
aggatggtactggatggggtgaccctagcaaacctggaaatactgcacaatggaacaact
ggttcagtagaaggttcattgctggaaaagcttgatatgtgctgtaccccatttggaaag
agactcttgaaacaatggctctgtgcacccttatgtaatcctgctgctatcaatgaccgc
ctggacgcagttgaagacctcttagctgaggctgccaaaatgtctgaaatacgtgatctt
ctgaaacagttgccagaccttgaaaaacacttgggcaagattcacagtattgggtcatca
tttaagaaccagaatcatccaaataacagggcaattatgtatgaagagatgaggtatagt
aaaaagaagattgtagactttttgtccaccttagaagggtttaaaataatccttgagatt
atctcaattttagaagatattgttgatggttttaaatccaaaactcttaaacaaatagca
atggttaaatctaaaaatccagcaggctgtttcccagatttgaaaacagagcttgaaagg
tgggacacgtcttttgatcataatgccgctcgcaggactggtgtgattaatcctcaaact
gggtttgattctgattatgacaaagcactacaggacataaatgatgttgaggagcgcctt
cgtcagtatatggaaaagcaacgtaaacggcttgggtgcaaagctatgatgtattgggga
gcaggcaaaaaccgctaccaaatggagattgcagaaagtgcattgcctcataacttacct
gacgaatatgtgttgaagtctagcagaaaaggctacaaacgttactggaccaaagatata
gagaagatgctgatggagatagtcaatgctgaagaacggagggatgcagctcaaaaggat
tgtatgaaaaggttattttataactttgataaaaacagcaaagactggcgaacagcagtg
gaatgcattgcagttctagatgtcctacagtgtctggcacagtacagtcagggatgtgat
ggaccattgtgccgaccagtaattctgcttccagaaaagaatacgccaccctttctggag
ctcagatcttcacgccacccatgcattacaaaaactttctttggagatgacttcatccct
aatgatatactgatcggtgtgaagggtaaagagccaggttcctggactgacagtcactgt
gttctggtgactggcccaaacatgggaggcaagtcgactctcatgagacaggctggcctc
ctggtaataatggctcaggtgggattcttcgtacctgctgaatcttgcaggattactcct
gttgatcgagtgtttacgagacttggtgcttcagacagaattctgtcaggggagagtacg
ttttttgttgagctgagtgagacttccagtattctgcagcatgcaacagagcattccttt
gttctaatggatgaactaggtagaggtacagcgacttttgatggaacagctattgctagt
gcagttgtcaaagagctttcagagagtatcaaatgccgtacaatgttttcaactcactac
cattcattagtagaggattacttccatagtccttctgtgcagctgggtcacatggcatgc
atggtagaaaacgaaactgatgatcctagtcaggaaacaatcacattcctctacaaattc
attaagggggcttgtcctaagagctatggttttaatgcagcaaggcttgctgacattcct
gaagaaattattcggaagggtcacaaaaaggcaaaagattttgaaaaatcaactctctca
ttaagattgtttaggaacctttgcctgattgctgaaggagcaccaactgttgtagatgat
cttcataaacaactcactatgctttgtaagtga
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