Eublepharis macularius (Leopard gecko): 129334453
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Entry
129334453 CDS
T09084
Symbol
YTHDC2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
emc
Eublepharis macularius (Leopard gecko)
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
emc03041
]
129334453 (YTHDC2)
Enzymes [BR:
emc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
129334453 (YTHDC2)
Spliceosome [BR:
emc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
129334453 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
AAA_22
Ank
nSTAND3
ATPase
Ank_4
PhoH
AAA_23
AAA_16
AAA_7
T2SSE
SRP54
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
129334453
NCBI-ProteinID:
XP_054842559
UniProt:
A0AA97JNZ8
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All DBs
Position
8:69307843..69371863
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AA seq
1435 aa
AA seq
DB search
MSRPNSVSPRPPGCGPPSGGPSTASAASSSSSCSGSGRAKGLKDIRIDEEVKIAVNIALE
RFRYGDQREMEFPSSLTSTERAFIHRLSQSLGLISKSKGKGANRYLTVKKKDGSELAHTV
MTCNLIPNTKHAIRSLVQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGI
PQVPVKRGESEFDSFRQSLPVYEKQDEIVRIIKENKVILIVGETGSGKTTQIPQFLLDDC
YKNGIPCRIFCTQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNG
VLLRTLMAGDSALSTVTHVIVDEVHERDRFSDFLLTKLRDTLQKHSSLKLILSSAALDVN
LFVRYFGGCPVIYIPGRPFEVKEMFLEDILRSTGYTNKEMIKYKKEKLREEKQQTTLTEW
YSAQDNSKTELQRQRAIPNVAEEYDLLDDGGDTVFSQLAEKDANCLEPWLIKEMDACLSD
IWLHKDIDAFAQVFHLILTENVSVDYRHSETSATTLMVASGRGFLSQVEQLIGMGANVHI
KSSNGWTALDWAKHFGQTEVVDLLESYCASLEVGYLDESSLVHANAGELSAEDRELLKAY
HHSFDDEKVDLDLIMHLLYNICHSCDAGAVLIFLPGYDEIVGLRDRILFDDKRFADNPHR
FQVFMLHSNMQTSDQKKVLKTSPPGIRKIILSTNIAETSITVNDVVFVIDSGKMKEKSFD
ALNCVTMLKMVWISKASAIQRKGRAGRCRPGICFRLFSRLRFQNMLEFQTPELLRMPLQE
LCLHTKLLAPINCPIADFLIKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADL
PVEPHLGKMVLCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFS
DHMALLRAFQAWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGG
GDIRDVNTNSENWAVVKGALVAGMYPNIVHVDRENVVLTGPKEKRVRFHPTSVLSQPQYK
KIPPANGQVAAIQALPTDWLIYDEMTRAHRIANIRCCSVVTPVTVSLFCGSARLPSNALQ
EPSSFKVDGVPNDSSDSEMEDRTTANLASLKLDEWLNFKLDPEAASLLLQLRQKWHSLFL
RRMRAPSKPWSQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLASSWRS
NTSRKSSAEVEFADDTVNAERVLVKSASPAFQQSLKYKERSVLHSKRSTDDRSDQSSVKS
TDSSSYPSPCASPSPPSSGKGSKSPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPS
NERKLNRAFWESSVVYLVFSVQGSGHFQGFARMSSEIGREKSQDWGSTGLGGVFKVEWIR
KESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWDRIPLGERNTAD
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcccgaacagcgtttcccctcggcctccgggctgcggcccgcccagcggaggg
ccctccaccgcctcggccgcctcctcgtcgtcttcctgctccggcagcggccgtgccaag
gggctgaaggatattcgtattgacgaagaggtgaaaatcgccgtcaacatcgccctggag
cggttcagatacggggaccaacgagaaatggaatttccttcatctttgaccagtactgaa
agagcttttattcaccgattgagtcagtctcttggtctgatttctaaaagcaaggggaaa
ggagcaaacagatatttaactgtgaagaaaaaagatggctcagagttggcgcacacagtg
atgacatgtaatttaattcctaacacaaaacatgctattagaagcttagtacagcgtttt
cctgttaccaataaagagcgcacagagcttttgccaaagacagagaggggaaatgtattt
gctgttgaagctgaaaatagagaaatgagcaaaacaagtggcagacttaacaacggcatc
cctcaagtcccagttaaaaggggagaatcggaatttgattcatttcggcaatctctgcca
gtttatgaaaagcaggatgaaattgttagaattattaaagaaaataaagttatcttgatt
gtgggggaaactggatcagggaaaactactcagattcctcaattcctactggatgattgt
tacaaaaatggaataccatgtcgaatattttgcactcaaccaagacgattggcagcaatt
gctgtggcagaaagggttgctgctgaaagaagagaaaagattgggcagacgattggctat
cagatccgattggaaagcagggtttctccaaagacactgttaacattttgcacaaatggt
gtattgctccgtacactaatggctggagatagtgcactgtcaactgtaacgcatgttatt
gtggatgaagtccatgaaagagatcggttcagtgacttcttgcttactaagttaagagat
acattacagaaacactcgtctttgaaattaatactctctagtgctgccctagatgtgaac
ctctttgtcagatattttggaggctgtccagtaatatatataccaggaagaccatttgaa
gttaaagagatgtttctggaagacatattaagaagtacaggttatacaaataaagagatg
ataaaatacaaaaaggaaaaacttcgagaggagaaacaacagacaactctgactgaatgg
tattctgcacaagacaatagcaagacagaattgcaacgacaaagagcaattccaaatgta
gctgaagaatatgatttgctggatgatggtggtgatacagttttcagtcaattggctgaa
aaagatgccaactgccttgaaccatggttaattaaagagatggatgcttgtctctctgat
atttggttgcataaagatattgatgcatttgcacaagtgttccaccttattttaactgaa
aatgtcagtgtggactacaggcatagtgagacaagtgcaacaactttaatggtggcttct
ggaagaggattcttgagtcaagttgaacagttgattggaatgggagcaaatgttcacatc
aaatcatccaatggctggacagctttggactgggctaaacactttggacaaacagaagtg
gttgatctattggaatcttactgtgcttcactagaagttggttatctcgatgaaagttcc
ttggtccatgcaaatgctggagaacttagtgccgaagacagagaactcttaaaggcttat
catcacagttttgatgacgaaaaggtggatcttgacctcattatgcacctattgtataat
atctgtcatagctgtgatgcaggagcagtcttaattttccttcctggatatgatgagatc
gttggcttgagagatcgtatactatttgatgacaagaggtttgctgataatcctcacagg
ttccaagtttttatgctgcattcaaatatgcaaacatcagatcaaaagaaggtgctaaag
acttcacccccaggcatccgtaaaataattctttctactaatattgctgaaaccagcatc
acagttaatgatgttgtctttgtgattgattctggaaaaatgaaagagaaatcattcgat
gcattgaactgtgtgactatgctaaagatggtatggatttctaaagctagtgccatccag
agaaagggaagggcaggacgttgtcggcctggaatttgttttcgacttttcagtagactg
cgatttcagaacatgcttgaattccagactccagaacttctaagaatgcctctgcaggag
ctttgtttgcatacaaaattgctagctcccatcaactgtccaattgctgactttttaata
aaagctccagaaccaccacctgctttgatagtgagaaatgctgtacagatgcttaagaca
atagatgctatggatacatgggaagatctgactgaacttggttatcatctggctgactta
ccagtagagcctcatcttggtaaaatggtgttgtgtgctgttgttctgaagtgcctggat
cctattctgacaattgcctgtactcttgcgtatcgtgacccttttgtgctacccacacag
gcctctcaaaaacgtgcagctatgttgtgcagaaagcgatttactgcaggaacatttagt
gaccatatggcccttctccgtgctttccaggcatggcagaaagcacgaagtgacggctgg
gaaagagctttttgtgagaagaacttcctttctcaggcaacaatggaaattatcatagga
atgagaacgcagttgcttggacagctcagagcttcaggttttgttagagccagaggggga
ggtgatataagagatgtcaacacaaattcagagaactgggctgtggtgaaaggtgcttta
gtggctggaatgtatccaaatatagttcatgttgatagagagaatgttgtcttgacgggt
ccaaaagaaaaaagagtccgatttcatcctacttctgttcttagccagcctcagtataaa
aagattcctccagcaaatggtcaagtggcagctattcaggcactccccacagactggctt
atatatgatgaaatgaccagagcccacagaatagccaacatcaggtgctgttctgttgtg
actcctgtcactgtgtccctcttctgcggatcagctaggctgccaagtaatgctttacag
gagccttcatccttcaaagtggatggtgttcccaatgacagcagtgatagtgagatggaa
gatagaacaactgctaacttggcttcactgaaactggatgaatggctcaatttcaaactg
gatcctgaggctgctagtctgctcttgcaactgagacaaaaatggcatagtttattttta
cggcgcatgagagctccttcaaagccctggtctcaagttgatgaggcaacaatacgagcc
atcattgcggtcttaagtactgaagagcagtctgcaggtctacagcaaccttctggaatt
ggacagagaccaagaccaatgtcatctgaagaacttcctttagcatcttcgtggagatca
aacactagcagaaaaagctcagcagaagtagaatttgcagatgatactgttaatgctgaa
agagttctagtgaaatctgcatctccagcattccaacaatcactgaaatacaaagaaaga
agtgttctgcactccaaacgtagcactgatgacaggtcagaccagtcatctgtgaaatcc
acagatagtagcagctaccctagcccttgtgccagtccttctcctccatcatctgggaag
ggttccaagtctccttctccaaggccaaatatgccagttcggtactttattatgaaaagc
agcaacttaagaaaccttgagatttcacaacaaaaggggatttggtctacaactcccagt
aatgagcgaaaactgaatcgtgccttttgggaaagtagtgttgtttacttggtattttct
gttcagggatcaggacactttcagggttttgctcgaatgtcttcagagataggacgtgag
aaaagtcaggactggggttcaactggattaggaggagtatttaaagtggaatggatccga
aaagagagtcttccatttcagtttgctcatcacttactcaacccttggaatgacaacaag
aaggtacagataagccgagatggccaggaactggaaccacaggtcggtgaacagttgcta
cagctgtgggaccgtattcctttgggagaaagaaacacagctgactga
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integrated database retrieval system
