Eublepharis macularius (Leopard gecko): 129335679
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Entry
129335679 CDS
T09084
Symbol
UPF2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03013
Nucleocytoplasmic transport
emc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
129335679 (UPF2)
03015 mRNA surveillance pathway
129335679 (UPF2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emc03019
]
129335679 (UPF2)
Messenger RNA biogenesis [BR:
emc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
129335679 (UPF2)
mRNA cycle factors
P-body specific factors
129335679 (UPF2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
129335679
NCBI-ProteinID:
XP_054844407
UniProt:
A0AA97JVZ7
LinkDB
All DBs
Position
9:106076588..106143321
Genome browser
AA seq
1292 aa
AA seq
DB search
MPAERKKSASMEEKETSLSNKDKEFSDRRTVNSRDKPKEDVRLGMKREVVKAPEDKKKKL
EEEKRKKDDKERKKKDEEKVKSEEEQKRKEEEEKQKLEEEEKRKQEEEVKRQQEEAAAQL
KEKEEAHQLHQEAWERHQARKELRSKNQNASDNRPEENFFSRLDSSLKKNTAFVKKLKTI
TEQQRDSLSHDFSGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSLL
QVWKKHFEARKEEKMPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRES
HTHVSVVISFCRHCGDDIAGLVPRKVKNAADKFNLSFPPSEIISPEKQQPFQNLLKEYFT
SLTKHLKRDHRELQNIERQNRRILHSKGELSEERHKQYEEFALSYQKLLANSQSLADLLD
ENMPDLPQDKPVPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPAI
LFKDNERCSQNKDSNKDDCRELKEIKDSKDVSGSEDLELDLENLDINDDALELECGDEAE
DLAKKLLDEQGKKQGADSTGADNSDGKQAARKQEDEEASTGSHLKLIVDAFLQQLPNCVN
RDLIDKAAMDFCMNMNTKANRRKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDL
CSMLKGDFRFHVRKKDQINIETKNKTVRFIGELAKFKMFSKSDTLHCLKMLLSDFSHHHI
EMACTLLETCGRFLFRSPESHLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPLA
EKTVKKKRPPLQEYIRKLLYKDLSKVTTEKVLRQMRKLPWHDPEVKDYVICCMINIWNVK
YNSIHCVANLLAGLVLYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYN
YRMVESAVIFRTLYSFTSFGVNPDGTPSPLDPPEHLFRIRLVCTILDTCGQYFDRGSSKR
KLDCFLVYFQRYVWWKKSLDVWTKDHPFPIDIDYMISDTLELLRPKMKLCHSLEESVRQV
QELEREFLIKLGLVNDKDSKGSMTEGENLEEDEEEEEGGVEIEEQSGNESEINDPEEEEG
SENEEEEGEEEEEENTDYLTDSNKENETDEENTEVMIKGGGLKRVPCAEDEDFIQALDKM
MLENLQQRSGESVKVHQLDVAIPLHLKSQLKKGPPLGGGEGESESGDTMPFVMLTRKGNK
QQFKILNVPMSSQLAANHWSQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLAQRPA
PANTNRERRPRYQHPKGAPNADLIFKTGGRRR
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgagcgtaagaagtcggcaagcatggaagaaaaagaaacatcattaagtaac
aaagataaggagttcagtgacaggcggacagtgaacagccgagataaacccaaagaggat
gttaggcttggcatgaagagagaggtggtaaaagcacctgaagataaaaagaaaaagctg
gaagaggagaagcggaaaaaagatgataaggagcgaaagaaaaaagatgaggaaaaagta
aaatctgaagaagagcagaagagaaaagaagaggaggaaaagcagaaacttgaagaagag
gagaaaaggaaacaggaggaggaagtgaagcgacaacaagaagaggcagctgctcagctg
aaggagaaagaagaggcacatcaactccaccaagaagcatgggagcgccaccaagccaga
aaggaactccggagcaaaaatcagaacgcgtcagacaaccgccctgaagaaaacttcttc
agcaggctggattccagtctcaaaaagaacaccgcctttgttaagaagttaaaaactatc
accgagcagcaaagagactccttgtcccatgattttagtggtctcaatttaagcaagtac
attgcagaggctgttgcttctatagtggaagcaaaattgaaaatatcggatgtgaactgt
gctgtgcatctgtgctctctgttccatcagcgttatgctgactttgccccgtcattgctt
caagtatggaaaaaacattttgaagcaagaaaagaagagaagatgcccaacatcaccaaa
ctaagaacggacttgcggttcattgcagaactgacaatcgttgggattttcactgacaag
gaagggttgtctttaatctatgaacaactgaaaaacattattaatgctgatcgggaatcc
cacactcatgtttctgtggtcattagcttttgccggcactgtggagatgacattgctggc
ttggtaccaagaaaagttaaaaatgcagcagataaatttaacttgagtttccctcctagt
gaaattattagcccagaaaaacaacagcctttccaaaatctgctgaaagagtactttaca
tctttgaccaaacatctgaaaagggaccacagggaactacaaaatattgaaagacagaac
aggcgcattctgcactctaaaggggagttgagtgaagaacggcacaagcagtatgaagaa
tttgccctgtcatatcagaagttgttggcaaactctcagtctttagctgatctcctggat
gaaaatatgcctgatcttccccaggacaaaccagtaccagaagaacacgggccgggtatt
gacatttttactcctggcaagcctggtgaatatgatttggaagggggcatttgggaagac
gaagatgctcgaaacttctatgagaaccttattgatttaaaggcattcgtaccggctatc
ctgttcaaggataacgaaagatgttctcagaataaggactccaataaagatgactgtaga
gaattgaaagaaattaaagatagcaaagatgtatctggtagtgaagatttggagttggac
ctggagaatctagatattaatgatgatgcccttgagttagagtgcggggacgaagcagaa
gatctcgcaaagaagcttcttgatgagcaaggcaagaaacagggagcagatagcaccgga
gctgacaatagtgacggaaagcaagctgcaagaaagcaagaagatgaagaggccagtact
ggttcacacttgaagctcattgtagatgctttccttcagcagctcccaaattgtgtaaac
agagacctgatagacaaggcagcaatggacttctgcatgaatatgaacacaaaagccaac
aggaggaagttggttcgggctctcttcattgttccacgacaaaggctggatttgttgccc
ttttatgccaggcttgttgccacactgcatccctgtatgtctgatgtagcagaagacctc
tgttccatgctgaaaggcgacttcagatttcatgtgagaaagaaggaccagatcaacatt
gaaacaaagaacaaaacggtacgattcattggtgagcttgcaaagttcaaaatgttctcc
aaaagcgacactctgcattgcttaaagatgttgctgtctgacttctcacatcaccatatt
gaaatggcatgcactctcttggaaacctgtgggagattcctctttagatcaccagaatcc
catttaagaaccagtgtccttttggaacaaatgatgagaaagaaacaagcaatgcatctt
gatgcacgctatgtcacgatggtggagaatgcctattactactgtaaccctcctctggct
gagaaaacggtgaaaaagaaacggcctcctctccaggaatacattcggaaactcctttac
aaagatctctccaaagtcactactgagaaggtcctcagacagatgcgcaaattgccctgg
catgaccctgaagtgaaagactatgttatatgttgtatgatcaacatctggaatgtgaaa
tataacagcattcactgtgtagccaaccttttagcagggctggttctgtaccaagaggat
gttggcattcatgttgtggatggtgtcctagaggatattcggctaggaatggaggttaat
cagccaaaatttaatcagcggaggatcagcagtgcaaagttcctcggtgagctgtacaat
tacagaatggtggagtcagcagtcatatttcgaactctgtactcgttcacgtcgtttggt
gtgaaccctgatggaactcctagcccccttgatcccccagaacatcttttccgaattaga
ctggtctgcaccatccttgacacttgcggacaatactttgacaggggatctagcaaacgg
aaacttgattgctttttggtctactttcagaggtatgtttggtggaagaaaagcctggat
gtttggacaaaagatcacccgtttcctattgacattgactatatgatcagtgatactcta
gaactgctgagaccaaagatgaaactctgccattctctggaagaatctgttaggcaggta
caagaactggaaagggaattcttaatcaaactaggccttgtgaatgacaaggactctaaa
ggttcaatgacagaaggggagaacttagaggaggatgaggaagaggaagaaggtggagtg
gagatagaagaacaatctggaaatgaaagtgaaatcaatgaccccgaggaagaggagggc
tctgaaaatgaagaagaagagggagaagaagaggaagaagagaatacagattatctcacc
gattcaaataaagaaaatgaaactgatgaagagaatactgaagtaatgatcaagggaggt
ggactgaagcgtgtcccgtgtgctgaagacgaagacttcatccaagcactggacaaaatg
atgctagaaaatttacagcaaaggagtggtgaatctgtgaaggtccatcagttagacgtt
gcaattcctctgcatctcaagagccagctgaagaaaggtccacccttgggtggcggggaa
ggagaatcggagtctggtgacacaatgccttttgtcatgttgacgcgaaagggcaacaag
cagcagttcaagatcctcaacgtgccaatgtcttcccaactggctgcgaaccactggagc
cagcaacaggctgagcaagaggagaggatgagaatgaagaagctgaccctggacatcaat
gagcggcaggagcaagaggactaccaggagatgatgcagtcccttgcacagcggccagct
ccagcaaataccaaccgagaacggcggccccgctatcagcatcccaagggagcacctaat
gctgatctaatctttaaaactggtgggaggagacgttga
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