Eublepharis macularius (Leopard gecko): 129336252
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Entry
129336252 CDS
T09084
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
emc
Eublepharis macularius (Leopard gecko)
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
emc03016
]
129336252 (RTCB)
Enzymes [BR:
emc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
129336252 (RTCB)
Transfer RNA biogenesis [BR:
emc03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
129336252 (RTCB)
Prokaryotic type
tRNA splicing ligases
129336252 (RTCB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
129336252
NCBI-ProteinID:
XP_054845327
UniProt:
A0AA97LAE5
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All DBs
Position
9:complement(32428129..32441474)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNSWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNSCRGGGAG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDECDVQPVKEQLAQSMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSARAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
QEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccggagctataacgatgagctgcaatatctggataagctggacaagaactcttgg
cgcatcaagaagggcttcgtgcccaacatgcacgtggaaggtgtgttctacgtgaatgat
cctttagagaagctgatgtttgaagagttaaggaactcttgtcgagggggaggtgctggt
ggctttctgccagccatgaagcaaattggaaatgtggctgcgctgcctggcatcatccat
agatctatagggcttcctgatgtccattctggctatgggtttgccatcggtaacatggct
gcctttgatatgaatgacccagaagcagtggtatctccaggtggtgtcggctttgacatc
aactgcggtgtccggctgttgcgtaccaaccttgatgagtgtgatgtccagcctgtgaaa
gagcagctggcccagtccatgtttgaccacattcctgttggcgtaggatccaagggcgtt
attcccatgaacgccaaggatttagaagaggctctggagatgggagtggactggtccctg
cgtgagggttatgcctgggctgaggataaagagcattgtgaagaatatgggaggatgctg
caggctgatccaaataaagtctctgcaagggctaagaaaagggggttaccccagctgggg
actctgggagcaggaaaccattacgctgagattcaggttgtggatgaaatttataacgag
tacgcagcccggaagatgggcatagaccacaaggggcaagtgtgtgtgatgatccatagt
ggcagcagaggcctgggccaccaagtagctacagatgcccttgtggctatggaaaaagcg
atgaaacgggacaagatcatcgtgaatgaccgccagctggcttgtgccaggattgcttcc
caagaggggcaggattacttgaagggaatggcagcagctggaaactatgcctgggtcaat
cgttcttccatgactttcctcactaggcaggcttttgcaaaagtcttcaatactacccct
gacgatctggatatgcacgtgatctatgatgtatctcacaacattgctaaagtagagcag
cacgtggtggatgggaaagagcggaccctgttggtgcacaggaaaggatcgacccgggct
ttccctcctcatcatcccctcatcgctgttgattaccaattgactggtcagccagtgctg
attggtggaactatgggaacgtgtagctatgtccttactggtacagaacaaggcatgaca
gaaacttttgggaccacctgtcatggtgcgggccgtgcactgtcccgagctaaatcgcga
cgcaacttggatttccaggacgtgttagacaagctggccgacatggggattgctatccgt
gttgcctctccaaaactggtcatggaagaagcacctgaatcttacaagaacgtgacagat
gtcgttaacacctgccatgcagctggcatcagcaagaaagccattaaactgagacccatt
gcagttatcaaaggctag
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