Eublepharis macularius (Leopard gecko): 129336603
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Entry
129336603 CDS
T09084
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03030
DNA replication
emc03410
Base excision repair
emc03420
Nucleotide excision repair
emc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
129336603 (RFC1)
03410 Base excision repair
129336603 (RFC1)
03420 Nucleotide excision repair
129336603 (RFC1)
03430 Mismatch repair
129336603 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
emc03032
]
129336603 (RFC1)
03400 DNA repair and recombination proteins [BR:
emc03400
]
129336603 (RFC1)
DNA replication proteins [BR:
emc03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
129336603 (RFC1)
DNA repair and recombination proteins [BR:
emc03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
129336603 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
AAA_30
AAA_14
BRCT_2
RuvB_N
AAA_5
Rad17
AAA_17
AAA_7
AAA_18
AAA_33
AAA_16
nSTAND3
Zeta_toxin
RNA_helicase
NTPase_1
AAA_19
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
129336603
NCBI-ProteinID:
XP_054845783
UniProt:
A0AA97JWE4
LinkDB
All DBs
Position
10:95988481..96106139
Genome browser
AA seq
1140 aa
AA seq
DB search
MDIRNFFGVINVGKKHECDTARKNEKPKDKEGEKAKSKEIKVKSSPPEDVSKQRQVTKKK
RIIYDSDSEDELQLVKKSRKSPNKKQSLKPSKFLKKDPVVYVSETDEDEDFVHKKVSKKP
KENGMSASRLLGTSAAPKADAKPKIRMKPFSPVKLTPTSVVDYFGMGSIQRSENKLVSSK
RKEPSPSRDSTLEDEAIAKQLQLEESAELERQLHEDEEFARTLAVLDETPKKKKPRKDPE
DKQGISTAKANPAEMERNKQAHKVKPPNLTLDSRNYAAEDHTCTESTRIPPDPHPESSVR
KESKALGNKAESSKISSKLSALKQKGENLQRENGTPKVKSVSLEEEKTPEKEKISPQKSK
SVSPEDSEKKRANYQAYRTFLNREGPKALGSKEIPQGGENCLEGLTFVITGVLESIERDE
AKSLIERYGGKVTGNVSKKTNYLIRGRDCGVSKCEKASALGTKIVDEDGLFDLLRTMPGK
KSKYEAAAEAEAKKAKSKREKTPQKVEAETREISPAGEELEVKRKKPSPEKDGGVKSREK
ETSEARRGLVFDQKALVEKCAATDAESPVQGIGTGKAEALLWVDKYRPTSLKAIIGQQGD
QSCAKKLLRWLRNWHKKASEDKQVKSSMFGCKEDGANFKAALLSGPPGVGKTTTASLVCE
ELGLSYVELNASDTRSKNSLKEMIADSLNNTSIKGFCSGASTSVSSKHVLIMDEVDGMAG
SEDRGGIQELIDLIKHTKAPIICMCNDRNHPKIRSLVHYCFDLRFQRPRVEQVKGAMMSI
AFKEGLKVPPPAMNEIILAANVDIRQVLHNLSMWGAKNEALTYDGVREDASKAKKDIKLG
PFDVVRKVFAVGEEASRMSLIDKSDLFFHDYSLAPLFVQENYIHVKPAAAGGSVKKHLIL
LSKAADRICDGDLVDRQIRSKQNWSLLPIQAIYSSVLPGELMRGYMNQFPNFPSWLGKFS
STGKHDRILQELSMHMSLRTHASKRAVNLDYLSYLKDAVVRPLCCLGTDGVQEAVAFMDS
YCLMKEDIENLMEITSWGGKPSAFSKVNSKVKTAFTRTYNKEMHLTPYSLQMVKKSKRQA
QSSLDTELNEELEADEVEFENERQTIENDAMIKKKTRPAKQSKVERNEETKKGKAKKKSK
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atggatatccggaatttttttggagttataaatgtaggaaagaaacatgaatgtgacact
gccaggaagaatgagaaacccaaagacaaggaaggcgagaaggcaaaatcaaaggaaatc
aaggtgaagtcttcacctcctgaagatgtttccaaacaaaggcaggttaccaaaaagaag
aggataatctatgactcagattctgaagatgagttacagttggtgaaaaaatctaggaag
tcaccaaataaaaaacagtctttaaaacctagtaagtttctaaagaaggaccctgtggtt
tatgtttcagaaacagatgaagatgaagattttgttcataagaaggtctctaaaaaaccc
aaggagaacgggatgtcagcaagccgccttctagggacgtctgcagcaccaaaggcagat
gcaaaaccgaaaatacgaatgaagcccttctctcctgtcaaactgacaccgacttcagtc
gttgattattttggaatgggcagcatccagcgatcagagaataaactggtgtcaagcaaa
aggaaagaaccttcaccaagcagggattccacgctcgaggacgaggcaattgccaagcaa
ctacagctcgaagagagtgcagagttggagagacaattgcatgaagatgaagaatttgct
agaactctggccgtgttggatgaaactccaaagaaaaaaaagcctcgaaaggatccagaa
gataaacaggggatttcaacagcgaaagctaatccagctgaaatggaaagaaataagcag
gctcacaaagtgaaacctcccaatttaacacttgattcaagaaattatgctgcagaggat
catacttgcacagaaagtaccaggataccgccagatccacacccagagtcttctgttagg
aaagagagcaaggctttggggaataaggcagagtcttcaaaaatcagctctaaattgtca
gctctgaagcaaaaaggagagaatctccaaagagaaaacgggactccaaaagtaaaatcg
gtttcactagaggaggagaagacacctgaaaaagagaaaatttctccccaaaaatctaag
tctgtaagtcctgaggattccgagaagaaacgagccaactatcaggcttacagaaccttc
cttaatcgagaaggtccgaaagcactcgggtctaaagaaataccgcagggtggtgaaaat
tgcttggaaggtctgacgtttgtgatcacaggtgtcttggaatctattgagcgagatgag
gccaagtctctaatcgagcgatacggggggaaagttactggtaacgtcagcaagaagacc
aactatcttattcggggccgtgactgtggtgtgtctaagtgtgaaaaggcgtcagctttg
gggaccaaaattgttgatgaagatggtttatttgacctcttacgaactatgccgggcaag
aagtcaaagtatgaagcagcagctgaagcagaggcaaagaaagcaaaatccaagagggaa
aaaacgccgcagaaggttgaagcagaaacaagagaaattagcccagcaggggaggagcta
gaggttaaaaggaaaaagccctccccagaaaaagatggtggtgttaaatccagagagaag
gaaacctcggaagctaggagaggtctggtttttgatcagaaagccttggtggaaaaatgt
gctgcgacggatgctgagagtcccgttcaggggatcggtacaggcaaggcggaggcgttg
ctgtgggtggacaaatacaggcccacttccctcaaagcaataatcggacagcaaggagat
cagagctgtgccaagaagctcttgcgctggcttcggaactggcacaagaaggcttccgag
gacaaacaggtaaaatccagtatgtttgggtgcaaagaggatggtgctaatttcaaagcg
gctttgctttcaggtccgccaggggttggtaaaacgacgaccgcttcattagtttgtgag
gaactgggtttgagttatgtggaactaaatgccagcgacacacgtagcaagaacagcttg
aaggagatgatcgctgactctctaaacaacaccagcatcaaaggattctgttcaggagca
tcgacttcagtcagctcgaagcacgtcctaatcatggatgaggtggacgggatggcgggc
agtgaagacagaggagggattcaggaactcatcgacctgattaagcacacaaaggctccc
atcatttgcatgtgtaatgatcggaatcacccgaagattcgttcccttgtccactactgt
ttcgaccttcgctttcagagaccacgtgtagaacaggttaagggtgccatgatgtctatc
gcctttaaagaaggcttaaaggttccaccaccagcaatgaacgaaatcatcttggccgcc
aatgtggacatcagacaagttttacataatctcagcatgtggggtgcaaaaaacgaagcc
ctgacttacgacggtgtcagagaagatgccagtaaagcaaaaaaagatatcaagctgggc
ccctttgacgttgtcaggaaggtttttgctgttggggaggaagcttctcgcatgtcactt
attgataagtcagacctgttcttccacgattactctctagccccactctttgtccaggag
aactacatacatgtgaaaccagctgccgctgggggcagcgtgaagaaacacctgatcctg
cttagcaaagcagcagatcgcatttgcgatggagatttagtagaccggcagatccgcagc
aagcaaaactggagccttctccccatacaggccatttattcaagtgtcctccctggagag
ctgatgagaggttacatgaaccaattcccaaatttcccgagctggttgggcaaattttca
tccaccggaaaacatgaccgtatcctgcaagagctgtcgatgcacatgagcctcagaaca
catgcgagcaagagagcggtgaacctggactatttgtcctacttaaaagatgccgtcgtg
aggcccctgtgctgcctgggaacagatggggtgcaggaggccgtggccttcatggattcc
tattgtttgatgaaggaagacattgaaaacctaatggaaataaccagctggggaggcaag
cctagtgcattttccaaagtaaattccaaggtcaaaacagctttcacacgaacctacaac
aaagagatgcacctcaccccctattcactgcagatggtaaagaaatcaaagcgacaagcg
cagtcttctctggataccgaactgaatgaagaattggaggctgatgaagtcgagtttgag
aacgagcgacagactattgaaaacgatgcgatgattaagaagaagacaaggcctgccaag
cagtcaaaagttgaaagaaatgaagaaaccaaaaaggggaaagcaaagaagaaatcaaaa
tga
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