Eublepharis macularius (Leopard gecko): 129337255
Help
Entry
129337255 CDS
T09084
Name
(RefSeq) collagen alpha-6(VI) chain-like
KO
K06238
collagen type VI alpha
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc04510
Focal adhesion
emc04512
ECM-receptor interaction
emc04518
Integrin signaling
emc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
129337255
04518 Integrin signaling
129337255
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129337255
09142 Cell motility
04820 Cytoskeleton in muscle cells
129337255
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
emc04147
]
129337255
00536 Glycosaminoglycan binding proteins [BR:
emc00536
]
129337255
Exosome [BR:
emc04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
129337255
Glycosaminoglycan binding proteins [BR:
emc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
129337255
Hyaluronan
Extracellular matrix or blood plasma proteins
129337255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
vWA_SIBA-E
Radical_SAM
Motif
Other DBs
NCBI-GeneID:
129337255
NCBI-ProteinID:
XP_054846792
UniProt:
A0AA97K0E4
LinkDB
All DBs
Position
11:complement(35584105..35656324)
Genome browser
AA seq
2272 aa
AA seq
DB search
MNILLVGLSLGSSVHKLKMFLTLFLIVLGTQTSITQKPASESTDVVLLIDSSNALGKKSF
PSVKAFVNKVISSLPVGPNKYRIALVQYSDDVHIEFRLDDYKGKTPMLNHLKKNVSYQGG
TLKTGNAIQKVHEAFFKVPRKDRNQIVVVTTSGLSEDDVKGPAKRLQDEGIKIIALGMQD
ASVQELQSVATQHFFYNFATPRDLATFSQNMPTVIGEAIQMDNGVVISTPSPPSVTENAS
KVTPEVARCLHDSVADIVFVVDEGVSHEDSNYIASFLSDTINSLDVKEGCIQTGLVTYST
EPQVVSLLKTETNKTDMLQKIQSFSPRAGKSNLGAAINITRKRIFDERAGSRKTQGVEQI
ATIVTNRPADDLLSNAAALLRQSDVTLFAIGIEGANATQLTEIVSHSPEQNIIKLAKFSD
LPNQTKTFQKKLFNKIQHTLYVQSERRLQLKTGCLDTEEADIYFLIDGSSSISWSDFNDI
KTFLKEVIKMFNVGPNHVRFGVVQYSSASHVKLHFELDSGTKRNTLERDINNIKQLTGDT
YTGEALKFMQPLFEKARKQRGNKVPCYLVVLTDGEAHDNVKEPAEILRNAKVNLYAIGVK
DANKTQLQEIAGSRVYSVQQFDSLKDIQAEVIQDICTEAACKEMKADIMFLVDSSGSIGD
ENFNKMKNFMRGLVNKSDIGLDQVRIGVVQFSGSPKEEFPLNKYSTKGDIIEAIGRMELI
KENTLTGKALEFVSEYFKPSKGSRSPMNKILILLTDGEAQDEVGTPAVALRKDGITIYSV
GVFNANKSQLVEISGKPELVFYVENFDILAKIEGNIIFGICNPYEDQIPECKRIERLDVV
FVIDSSGSIGDTNYGLMQDFMIRMVNKSDVGSDRVQFGALKYSDDPVTLFYLNTYNTKSA
IISAIRSDTLLGHNTYTAKALRHSESFFTEKHGSRHRRNVPQALVVITDGESHDAAELDE
VSKRLRARDIAIYAVGIKEAKTDELQTMAGPNKTYHYVDNFEGLQNISTDFSNKLCNQSK
TECEVHADLVFLIDGSRSIWPPDFEEMKKFLNNLLDQISYNSNMQVGMAQFSKSYREEFP
LGGHPSKSELQDKISKVSMMQGDETCIGGALQKVKAFFSPPRRRVARDIQPKLLVITDGQ
ATDDVAQPADNLRKEGVEIYAIGVGNVSDIQLQSIAGSPERKYKIANFPGLPDITKRIAN
EMCNGGVKAACFVDVVMGFDISSQKPGDRLFHGHPQLEAQLPKIIEYLTSVSTVSCNTGT
KTQFSVAISMGNTNSTFSSDLQVEHEKIMEELRKITINNPSHLNVTFLDTLWNTFQNIPD
NEKRSKVLLIFSDGLDDDVEVLQQKSEEFRQKGLDGLITVTLEGASNFHNLRSIEFGKGA
GYNNHLTIGLQNIAKSLFEYMAQIAERTCCCVFCTCMREEGPLGLRGRPGPKGYIGTNGT
RGYIGDDGEPGPSGPPGPVGQQGYVGCQGDQGEKGRRGWSGEKGDNGIDGIYGINGEEGA
PGLPGPKGEKGGPGQQGNPGSRGLPGERGQKGFQGDLGNPGVDINIVGAIGPKGLQGSKG
QRGPKGSAGIAGSEGNKGPEGQRGLPGPPGRKGAPGPDGLPGEHGFQGPQGAAGIPGVKG
VKGSAGNKGLQGSLGEAGPKGEQGKPGPRGRKGETGDPGEKGETGPHGQRGMKGNEGTAG
YGKPGRKGSKGQEGSSGDVGIQGEIGEPGIPGGPGPKGNRGEMGPVGKPGTRGAPGERGY
PGRLGAKGMKGLASFSPCELIEYVREHSPCWKGAQECPVYPTELVFALDVSQDTTPAIFE
RMREIIITIVNNTKIRGSNCPLGARVAIVSYNSNTHYLIHFSDFRSKELLLQELKTLSYQ
RSSSGRDMGGSMRFVARNVFKRTLQGANVRKVAVFFSNGQSANTVSINTAVLEFSALDIL
PVVIAFKNIPEVNRAFQMDDSRLFQVINIHQERDFTPALQRFHQCILCYDKCRLNESCLR
DKTSSPPTYMDAAFILESARNVSPLEFAKLKDFLSLSLDNFDISARPESTLIGDRVAVVS
HAPPDFRPQTQKSPIKTEFDLVTYDNKERMKRHIQESVQQLNGATAVGHAIQWTITNIFA
EAPSQRKHKAIFVISAGETSRWDKEVLKDAALRAKCQGYALFVLSLGHEYDDVELRELAS
RPVEHHLVQLGRCHKAELGYAVKFLKPFLHLIRNKINSYPPTQLRKRCSDISTQKPVYVP
LLSRDSSPVDETVSRRAKGLETESAVLEYLPGDSVNSEHFISNAQQIIELGN
NT seq
6819 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcttgttagttggtctatctcttggctcatcagtacacaaactgaagatgttt
ctgactttgttcctcattgttcttggaacacagacttctataacacagaaacctgcctct
gagtctacagatgttgtccttttgattgacagttcaaatgctcttggcaaaaagtctttc
ccatctgtgaaagcatttgttaacaaagtaatcagcagtcttccagttggcccaaacaaa
tatcgtattgcccttgtgcagtacagtgacgatgtgcacattgaattccggctggatgat
tataaaggcaaaacccccatgttaaaccaccttaaaaagaacgtttcataccagggtggg
actttaaaaactgggaacgccatacaaaaggtccatgaagcgtttttcaaagtcccgaga
aaagacagaaaccaaattgtggtggtcacaacttcaggtctttcagaagacgatgtgaag
ggacctgcaaaaaggttgcaggatgaggggataaaaataatagctttaggaatgcaggat
gcatctgttcaagaactacaatcagtggctacgcagcattttttctataactttgctaca
ccaagggatcttgcaaccttttctcaaaatatgcccacagttattggagaagctatacaa
atggataatggtgtggtcatctcaacaccttctccaccaagtgtaacagaaaatgctagc
aaggtaacccctgaagttgcaaggtgtctacacgattcagttgcagacattgtatttgtg
gtggatgaaggcgtttcacatgaagactccaactatattgcatcattcttgagtgacaca
ataaactctcttgatgtgaaagaagggtgtatacaaactggcctagtgacatacagcacc
gagccgcaagtagtatcattactaaagactgaaacgaacaaaactgatatgctgcagaaa
attcagagcttctcaccaagagctgggaaatctaacttgggcgctgccattaatattacc
aggaaaagaatttttgatgaacgtgctggaagcagaaagacccaaggagttgaacaaatt
gccaccatagtcaccaacagaccagccgatgacctcttaagtaatgctgctgctctcctt
aggcagagtgatgtgaccctgtttgccattggcattgaaggagcgaatgctacccagtta
acggagatagtatcacattcaccagaacaaaatattataaaacttgccaaattctctgac
ctgccaaatcagaccaagactttccaaaagaaactcttcaacaaaatacagcacacactt
tatgtccaatctgaaagaagattacagctcaaaacaggatgtctggacacagaagaggct
gatatttatttcctcattgatggctcttcaagcattagctggtcagatttcaatgatata
aaaacttttctgaaagaagtgattaaaatgtttaatgttggaccgaatcatgttcgattt
ggagttgtgcaatattcaagtgcttctcatgttaaattacactttgaacttgattctggc
actaaaaggaacactttagaaagagatattaataatattaaacaattaactggagataca
tatactggagaagctctgaaattcatgcaacctttgtttgaaaaggcaaggaaacagcgt
ggaaacaaagtgccctgctatctcgttgtattgacagacggagaagcccatgataatgtg
aaggaacctgctgagatactgagaaatgcaaaggtgaacctctatgctattggtgtaaaa
gatgctaataaaacacaattgcaggagattgcaggctcaagagtttactcggtgcaacaa
tttgactcactgaaagatatacaagctgaggtcatccaagatatatgcactgaagcagcc
tgtaaggaaatgaaagctgacatcatgttcctagtggacagctctggtagcattggtgat
gagaattttaacaaaatgaagaacttcatgaggggtctggtaaacaaatctgacatcggc
ttagaccaagtacgtatcggtgttgtccagttcagtggcagccctaaagaagaattcccg
ttaaacaagtattcaacaaaaggtgacataattgaagcgatcggaaggatggaactcatt
aaagagaacacactcactggaaaagcactggaatttgtgtctgaatatttcaagccatcc
aaagggtcccgatcccccatgaacaaaattcttatcttgctcacagatggggaagcacaa
gatgaagtaggaactccagccgtagccctgagaaaggatggtatcactatctattcagtt
ggtgtttttaatgccaataaatcacagcttgtagagatcagtgggaaacctgagctggtg
ttttatgtggagaattttgatattctggcgaagatagaaggcaacatcatttttggcata
tgtaatccctatgaggatcaaattccagagtgcaaaaggatagaacgcttagatgttgtc
tttgtaatagatagttccggcagcataggcgacacaaactatggcctcatgcaggacttc
atgattcgcatggtcaataaatctgatgttggcagtgaccgagttcagtttggagctctg
aagtattctgacgatccagtaacactgttctaccttaatacctataacacgaaatcagct
atcatttcagctatccgaagtgacacacttttgggccacaatacttacacagctaaggct
cttagacactcagaatcattcttcactgagaaacacggaagtcgccaccgcaggaatgtt
cctcaagcacttgtggtgattactgatggagaatcacacgatgcagcggaactcgatgaa
gtgtctaaaagactcagagcccgtgacattgcgatttatgctgttgggataaaagaagca
aagacagatgaacttcagaccatggcaggaccaaacaaaacatatcactatgtggacaac
tttgaaggactacaaaacatatccacagatttctcaaacaagctatgcaatcagtcaaag
acagaatgtgaagtccacgctgatcttgttttcttgattgatggctccagaagtatatgg
ccacctgattttgaggaaatgaaaaaattcttgaacaacttgcttgatcagattagttat
aacagcaacatgcaagttggcatggcccaatttagcaaaagttacagagaagaatttcct
ctgggtggtcaccctagcaaatcagagctgcaagacaaaatctctaaagtgtcaatgatg
caaggtgatgaaacttgcattggaggagctctccaaaaagtgaaggccttcttcagtcca
ccaagacgcagagtggctagagatattcagccaaagctgctggtaatcactgatggacaa
gcaactgacgatgttgctcaacctgctgacaatctgagaaaggaaggtgtggagatatat
gcaataggagtagggaatgttagtgatatacagcttcaatccatagctggatctccagaa
aggaaatacaaaattgctaatttccctgggctgcctgatatcacaaaacgcatagctaat
gaaatgtgtaatggtggagttaaagcagcatgttttgtggacgtcgttatgggatttgac
atttcatctcaaaagccgggtgaccgcttattccatgggcatcctcaactggaagcccag
cttcctaagattatagaataccttacatctgtaagcactgtgagttgcaatacaggaaca
aaaacacagttcagtgtggctatttctatgggaaacacgaattcaactttctcatcagac
ctccaagttgaacatgaaaaaatcatggaagaactcagaaaaattacaatcaacaatcca
tctcatctcaatgtcacattcttggacacactttggaacacatttcaaaacatacctgat
aatgaaaaacgaagcaaggtgttacttattttctctgatggcttggatgatgatgtagaa
gtgcttcaacaaaaatctgaagaatttaggcaaaaagggcttgatggactgataacagtt
accctggaaggcgctagcaactttcataacctccgatctattgaatttggaaagggagct
ggatataataatcatttgacaattggcttgcaaaatattgccaaaagcttatttgagtat
atggcgcaaattgctgagagaacatgctgttgtgttttttgtacatgcatgagggaagaa
ggcccccttgggctgagaggcagacctggaccaaaggggtatattggtactaacggcact
cggggatatataggagatgatggagagccaggtcccagtgggcctcctggaccagttgga
cagcaaggctatgtgggatgccaaggtgatcagggagaaaaagggcgacgaggatggagt
ggagaaaagggagacaatggaattgatggaatttatggaatcaatggagaagagggagca
cctggtctgccaggaccaaaaggagaaaaaggaggccctggccagcagggcaacccggga
tcaagaggacttcctggagaacgtggtcagaaaggcttccaaggagatcttggtaatcct
ggagtggacattaacattgtaggagcaattggccccaagggcttacaagggagcaagggt
caaagaggaccaaaaggttcagcaggcattgcaggatctgaaggaaacaagggacctgag
ggacaaagaggacttccagggccaccgggaaggaaaggagcacctggcccagatggtttg
ccaggagaacacggatttcaaggcccacagggggcagctggaattcctggtgtgaaagga
gtgaaaggcagtgcaggaaataaaggtcttcagggaagtttgggagaggcaggcccaaaa
ggggagcaaggaaaacctggacccagagggaggaaaggagaaactggagatcctggagaa
aaaggagaaacaggaccccatggtcagaggggaatgaaggggaatgagggaactgctggt
tatggcaaaccaggaagaaaaggatcaaaggggcaagaaggatcctctggagacgttgga
attcagggtgaaattggagagcctggtattcctggggggcctgggccgaaggggaataga
ggtgaaatgggccctgtgggaaaacccggtacacgaggtgccccaggagaacggggttat
ccaggacgtctgggtgcaaaaggaatgaagggactggcctcattttcgccctgtgaactc
attgagtatgtgcgtgaacacagcccttgctggaaaggagcgcaggagtgtccagtatat
cccaccgaattagtgtttgccttggatgtatctcaagataccactcctgcaatatttgaa
cgaatgagagagatcatcatcacaattgtgaacaacaccaaaatcagggggagcaattgc
ccactgggagcaagagtagccattgtgtcctacaactccaacacccactatctgatccac
ttctcagatttcaggagcaaggaactgttgctccaagagctgaagactctttcgtaccaa
agatcctcaagtggacgggacatgggtggatcgatgagatttgtggccaggaatgttttt
aagcgaactctccaaggtgctaatgtgagaaaagttgctgtgttcttcagcaatggtcag
tctgctaatacagtttcaatcaacacagcagtcctggaattcagtgcattagacatcctt
ccagtggtcattgcttttaaaaacatccccgaggtcaaccgtgcttttcagatggatgac
tcaagactgtttcaggttattaatattcatcaggagagagattttacaccagctttacaa
agattccaccagtgcatactttgctacgacaaatgcaggttgaatgaatcttgcctacgt
gacaaaacctcctcacctccaacttacatggatgctgctttcattttggaaagtgcaagg
aacgtaagccctcttgaatttgcaaaactgaaggacttcctaagtttatcccttgacaac
tttgacatttctgctcgaccagagagcactttgataggcgacagagtggctgtggtgagc
catgcaccaccagatttcaggcctcaaacacagaagagcccaattaagactgagtttgat
ttagtgacctatgataataaagagcggatgaagaggcatatccaagaatctgtccagcag
ctgaatggagcaactgctgttggccatgccatacagtggaccatcactaatatctttgca
gaagcacccagccagaggaaacacaaagctatctttgtgatatctgcgggggaaacaagt
cgatgggacaaggaagtgttgaaagatgcggccctgagagccaagtgccaaggctatgct
ttgtttgtgctctcgttagggcatgaatatgatgatgtagaactcagggaactggcaagc
agaccagtggagcatcatctggtacagcttgggagatgtcacaaggctgaacttggatat
gcagtgaagtttctgaagccatttctgcatcttatccggaataaaatcaacagctatcca
ccaacacagctcaggaaaagatgttcagacatcagcacccagaagccagtatatgttcca
ctactgtccagagacagctctccagtggatgagactgtgtcaagaagagctaagggtcta
gagactgaatctgcagttctggagtatttgccgggcgattcagtaaactctgaacatttc
atcagcaatgcacagcagattattgaacttggaaattag
DBGET
integrated database retrieval system
