Eublepharis macularius (Leopard gecko): 129337461
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Entry
129337461 CDS
T09084
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
129337461 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emc03019
]
129337461 (SMG5)
03032 DNA replication proteins [BR:
emc03032
]
129337461 (SMG5)
Messenger RNA biogenesis [BR:
emc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
129337461 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
129337461 (SMG5)
DNA replication proteins [BR:
emc03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
129337461 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
129337461
NCBI-ProteinID:
XP_054847117
UniProt:
A0AA97JZV4
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All DBs
Position
1:complement(228627040..228681959)
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AA seq
1051 aa
AA seq
DB search
MSQGSGSGGGEPEAKALHTKRLYRAVVEAVHRLDLILGNKAAYQEVFKPENISLRNKLRE
LCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLIAGIGF
YQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPVSASEKEMEWAQMACHRCLVYLGDL
ARYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCIQS
EVSFEGAYGNLKRLYDKAAKMYHQLKKCEARKLSPSKKRCKDIKRLLVSFMYLHSLLQPK
SSSVDSELTSLCQSVLEDFNLCLFYLPSSPNLSSANDDEEECENGYSFLPDLLIFRMVIV
CLMSVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFQNDGAEEP
ESREPSSNSVEKEAEADLANHRPSEEQRKSESKRGKKFSRLSCLRRRRHAQKVDESDLSE
GFDSDSSPGSTKGSDGSETGSEKSDEEAEAAFDMETDSDMNSQESRSDLEDIEDEPDADG
GGPARSMRNGDREPLGSVESEGRPVDSKSPGIPKTEPLEPVANGPGSLGTSDASIASNLQ
AMSTQLFQTKRCFRLAPTFSNVLLKPSCGPPSQKEAVDSKPCINGDIERPSMAEQDDASE
SEESVASSKSCKNERSLQEKLEIITNEGLLPTVKVFLDWLRTNTDLIIMCAQSSQSLWNR
LSVLLNLLPSAGDLQDSGLAFCNEVKNMLPGSELPDLSACLLLPEDVALRNLPPLKNAHK
RFNFEQDRPALSEVEESVVRICCIRSFGHFITHLQGSILQFNSEVGIFISIAQSEQDNLL
QQAQAQFRMAAEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQCVMSPYLVPDTQALC
QHLCTIRQLAASGRFIVIIPRTVIDGLDFLKKENAGARDSIRYLEAEFKKGNRYIRCQKE
AGKSFERHKLKRQDLDAWNLYKILDSCKQLTTSQGSSEDDTTGMVTIITGFQVDDLSKLS
APMQSAIQAAASASVEVKNVLEFFKQWKEMG
NT seq
3156 nt
NT seq
+upstream
nt +downstream
nt
atgagccagggcagcggaagcggcggcggcgagcctgaggccaaggccctccataccaag
cgactctaccgagcggtggtagaagcagtgcatagattggatctcattcttggaaacaag
gcagcttatcaagaagtatttaaaccggagaacatcagcctgagaaacaagttacgtgaa
ctatgtgtgaagctgatgttcttacacccggtggattatgggaggaaagcggaagaattg
ctgtggaggaaagtttactacgaggtcatccagctcattaaaacaaataagaagcacatt
catagtcgcagtactctggagtgtgcctaccgtactcaccttattgccggtattgggttt
taccagcaccttcttctctacattcagtctcactatcagctggagctccagtgctgtatt
gactggacacatgtgacagatcctctgataggctgcaagaaacctgtgtctgcatcggag
aaggagatggagtgggctcagatggcctgccaccgctgtctggtttatctgggagattta
gctcggtatcagaacgaattggcaggtgtggacacagaattgctggctgagaggttttac
tatcaagccctttctgttgcaccacaaataggcatgccctttaaccagctggggacactg
gctgggagcaaatactacaacgtggaagccacctactgctacctgcgctgtatccagtca
gaagtgtccttcgaaggtgcttatgggaacctcaaacgcctctatgacaaggctgccaaa
atgtatcaccagctgaagaaatgcgaagccaggaaactgtcaccaagtaaaaagaggtgc
aaagacattaaaaggttactagtgagcttcatgtacctgcatagcctcctgcagccaaag
agcagttctgtggattctgagctgacgtctctctgccagtcagtcctggaggatttcaac
ctctgtctgttctacttgccctcttcgcccaacctgagctctgccaacgatgacgaagag
gaatgcgagaatggctactctttcctgccagacctcctcatcttccgcatggttatcgtc
tgcctgatgagcgtccacagcctcaagagggcaggctccaagcagtatagcgcagcgatt
gctttcacgctggccctcttttcgcacctcatcaaccatgtcaacattcgcttgcaggcg
gagctggaagaaggcgagaacccagtgccagccttccagaatgacggggcagaagagccg
gagtcccgcgagccatcatcaaattctgttgagaaagaagctgaggctgatctagccaac
cacagacccagtgaggagcagaggaagagtgagagcaaaaggggcaagaaattctcacgc
ctctcttgccttcgccgccgccgccatgcccagaaggtggacgagagcgacttgagcgag
ggctttgactccgattccagccctggttccaccaagggcagtgacggctctgagacaggc
tcagagaagagtgacgaagaggctgaagcagcttttgacatggagacggactctgacatg
aacagccaggagtcccgctcagacttggaggatatagaggatgagccggatgcagacggg
ggaggcccagccaggagcatgaggaatggagacagggagcccttgggctctgtggaaagt
gaaggcaggccggtggactccaaaagccctggcattcccaagaccgagcccctggagcct
gtggccaatgggccgggctcgctgggcaccagtgacgctagcatagccagcaacctgcaa
gccatgtccacacagctcttccagaccaagcgctgcttccgactggcccccactttcagc
aacgtcctcctcaagcccagctgtggaccaccttcccagaaagaggcagtggacagcaag
ccttgcatcaatggggacatcgagaggcctagcatggctgagcaagatgatgcttcagag
tcagaagaaagtgttgccagtagcaaatcctgcaagaacgagcgttccctccaggagaag
ctggagatcataaccaacgaggggctgctgccgactgtcaaggtgttcctagactggctg
agaacaaacactgaccttatcatcatgtgtgcacagagctctcaaagtttgtggaacaga
ctttctgtccttctaaacctacttccttcagctggagacttgcaagactcggggctggcc
ttctgcaatgaagtgaagaacatgttgccggggagtgaacttccagacctgagtgcctgc
ttgctccttccggaagacgtggccctccgtaaccttcccccgttgaagaatgcacacaag
aggtttaatttcgagcaggacagacctgcgctttcagaagtggaggagtctgtggttcgt
atatgctgcatccggagctttggccacttcatcacccacctgcaaggcagcattctgcag
ttcaactcggaagtcgggatcttcatcagcattgcacagtctgagcaggacaatttgctg
cagcaggcccaggcccaattccgcatggctgcggaggaagcacgccggaacaggctcatg
agagacatggctcagcttcggctgcagctggaggtgtcacagttagaaggaagtctccag
cagcccaaagcacagtgtgtcatgtccccctacctagtccctgacacccaggcgctctgc
caacacctctgcaccatcaggcagctggccgccagcgggagattcattgtcatcatccca
cgcacagtaattgatggcttggatttcctgaagaaagagaatgcaggagctcgcgacagt
atccgatacttggaggcagaattcaaaaagggaaacaggtacattcgctgccagaaagaa
gctgggaagagctttgagaggcataaattgaagaggcaggatttagatgcttggaacctt
tataaaatactggacagctgcaaacagctgacaacatcacaagggagcagcgaagatgac
accaccggaatggtgaccatcatcacaggcttccaagtggacgacctgagcaaactttct
gcacccatgcagtctgcgatccaggcagcagccagtgccagcgttgaagtgaaaaatgtt
ctggaattcttcaagcagtggaaggaaatgggttga
DBGET
integrated database retrieval system
