Eublepharis macularius (Leopard gecko): 129338487
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Entry
129338487 CDS
T09084
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
129338487 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emc03019
]
129338487 (PARN)
Enzymes [BR:
emc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
129338487 (PARN)
Messenger RNA biogenesis [BR:
emc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
129338487 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
RRM_1
NCBP3
Motif
Other DBs
NCBI-GeneID:
129338487
NCBI-ProteinID:
XP_054848743
UniProt:
A0AA97K0M7
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All DBs
Position
12:29312261..29334157
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AA seq
634 aa
AA seq
DB search
MEMTRSNFKENLGKVYEAIEEADFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMSFLLFQFGLCTFKYDLTEAKYIMKSFNFYIFPKPFNRTSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGVGTLSYISPNATKCPVTIPEDQKKF
IENVVERIEDLLQKEESTSLELEPCTGFQRKLIYQMLSWKYPKGIHVETLETEKKERYII
VSKVDEEERKRREQMKQAREQEELNDAVGFSRVIHAIANSSKLVIGHNMLLDVMHTIHQF
YCPLPEELGEFKEVTTCVFPRLLDTKLMASTPPFKEIISNTSLAELEKRLKERPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNPMSATSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYIEKKHEEKRQGKRKWTEDSWKEMEAKRL
KPQAVPYVLQSRYCSFTSFTASSAVGKRSMSPIQEESGCDEVEEATQDPSDSFEESAEEK
KKKAKKFKRAKREQDSTGGVDSASSALFEVPDMW
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggagatgaccaggagcaattttaaggaaaaccttggcaaagtttatgaagctattgag
gaagcagacttcttggcgattgatggagagttttcagggatcagtgatggaccatcggtc
agtgcactaaccaatggctttgacacgcctgaagaaaggtatcagaaactgaaaaagcat
tccatgagtttcttgctgttccagtttggactttgcacttttaaatatgatctcacagaa
gcaaagtacatcatgaaatcatttaatttctatatctttcccaaacctttcaacagaaca
tctccagatgtcaaatttgtctgtcagagttcaagtatagactttttagcaaaccaggga
tttgattttaataaagtttttcgcaatggaatcccttatttaaatcaagaagaggaaagg
cagctacgggagcagtatgatgaaaagcgttctcaagccaatggtgtggggactttgtct
tacatctccccgaatgccaccaaatgtcctgtgactattccagaggaccagaagaagttc
attgagaatgtagtagaacgaatagaagatctcttacagaaggaagaaagcaccagcttg
gagttggagccatgcacaggattccagaggaagctgatctatcagatgttgagctggaag
tatccaaaaggcatccatgttgaaactctggaaacggagaagaaagaaagatatattatt
gttagcaaagtggatgaagaggagcgcaaacggagggagcagatgaaacaagctagagag
caggaggaacttaacgatgccgtgggattttcccgagtcattcatgcaattgccaattct
agcaagcttgtgattggccataacatgttgctggatgtcatgcacaccatccaccagttc
tactgccccctcccggaggaacttggtgaatttaaagaagtaacgacctgcgtctttcca
aggctcctggatactaagctgatggccagtaccccgccattcaaggagattatcagcaac
acatctcttgcagagctagaaaagcgtctaaaggagagacccttcagccctccaaaagtc
gaaagcgcagaaggattcccgagttacgacacagcctccgagcagcttcatgaagcaggt
tacgatgcttatataaccggcctgtgcttcatctccatggccaacttcctaggttccttc
ctcagccctcccaagaaccccatgtctgccacatcaaagctcattgagccttttttcaac
aagttatttctgatgagagtgatggacatcccatatctcaatttggaaggacctgacttg
cagccaaagcgagaccatgttctttatgttacgtttccaaaagagtggaagacgagtgac
ctttaccagctttttagcgcttttggtaacattcaggtctcctggattgatgatacgtcg
gcatttgtgtcacttagtcaacccgagcaagtacaaatcgctgttaataccagcaggtat
gcagaaagctacaggatccagacctacgcagaatacattgagaaaaagcatgaagaaaag
aggcaaggaaagaggaaatggactgaagacagctggaaggagatggaagcaaagcggtta
aaaccacaggctgtgccctatgtcctgcaaagccggtactgcagtttcaccagttttaca
gcatccagtgctgtgggaaagaggagtatgagtcctattcaagaggagagtggctgtgac
gaggtcgaggaagcaacacaggatccctctgactcatttgaggaatctgcagaagagaag
aagaaaaaggccaagaagttcaagagagccaaaagggagcaggactcaacaggaggtgtt
gacagtgcttcctcggcacttttcgaagtccctgacatgtggtag
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