Eublepharis macularius (Leopard gecko): 129340305
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Entry
129340305 CDS
T09084
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
129340305 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emc03021
]
129340305 (POLR1A)
Enzymes [BR:
emc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
129340305 (POLR1A)
Transcription machinery [BR:
emc03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
129340305 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_1
HMG_box
zf-RING_4
DUF1639
Motif
Other DBs
NCBI-GeneID:
129340305
NCBI-ProteinID:
XP_054850998
UniProt:
A0AA97LCQ5
LinkDB
All DBs
Position
12:complement(30396455..30454892)
Genome browser
AA seq
1706 aa
AA seq
DB search
MAAAREAPWRRLTGLTFGVYRAAEIEKLSVKSITNPRFLDNAGTALPNGLYDLALGPLDN
KEVCATCVQDFNNCPGHLGYTDLPLTVYNPLFFDKLFLLIRGSCLSCCHLTCPRAVIHLL
LNQLKLLDVGLLEAVYDLEAVLSRFLEENAGALEIDIEEMLSQHTKEILQNNQLKDQGSN
VKNVCECKSKLISQFWKSHTSSKRCPNCKAERSLVRKEHNSKLTVTYPTVVIQKSGKQMI
VEEAAIIDETQLGKRGYLTPSSAKAHIEALWNNEGFFLSKLFSGMMVSEDSHFNPEMFFL
DKLVVPPSRYRPVSFVGDQMFANGQTVNLQAVMKDAQLARKLLAFMAQDLKQSMQSEEGE
IQKPGEQPLELLDRSVLVTIPGQTVADKLYNIWIRLQSHVNILFDSDMDKLMSEKFPGVR
QILERKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVH
ELRQAVINGPGVHPGASMVINEDGSRTILSSTSQTQREAIAKQLLTPSTGAPKPGIKTVC
RHIKNGDVLLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFP
QNELGRAEAYVLACTDEQYLVPKDGKPLAGLIQDHMVSGTSMTTRGCFFTREQYMELVYQ
GLTDKKGRVKLLPPAIIKPHPLWTGKQVVSTLLTNVIPEDWPLLNLSGRAKIDGRAWVTA
SGPGIYPSGLDFMCESQVIIQNGELLCGVLDKAHYGSSAYGLVHCCHDVYGGETSGKVLT
ALARLFTAYLQFYRGFTMGVEDILVKPKADHRRRKIMKECTRCGSKAIKAAFNLPETSSG
EQARGKWQDAHLHKDQRNFNMVDLKFKEEVNHYSNEINKVCVPLGLHRSFPENNLQLMVQ
SGAKGSTVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDFSPRSGGFVTGRFLTGI
KPAEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLIVHYDLTVRDSDGSIVQFLY
GEDGLNVPKIQFLQPKQFPFIADNFKVIEKSKHLDEVLSKMDPRHAKEQFRSIKRWQVKH
QQTLRKGAFLLFCQKKMASVMAQIPTGELENSRETKTLQLLKMWYGLNETRRSKYQKKAA
KCPDPCLGIWQPDIYFASVSETFENDVENFLTEWNTRNDRGYCKSELSSERLKDLLHLKW
QQSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASTNIK
TPMMSIPVLNTKRAHKRVKRLKKQLTRVCLGEVLQNVDIQESMCLEMNLNKHLVYTIKFT
FLPHECYGDEICVKPRNILNFMETSFFKILLETIKRKSSKLISYNNVGTQRANHRDLGSD
GKVGASQENQDDQEAEEEGRVPDGEIDEGDADATDAKRREKQEEEVDYESDEGAVEEDEI
PDKEEAALCDGDRDPEAAETQEDTSAPFSNEQFQNKRKTLDKLTDHRVNTVLESHSAIES
YAYDTDNELWCEVTLKLPLSKEYFDLASLLTSLANKTVIHETKGITRCLLNETTIKKEEK
ALMLQTEGINLPELFQYTDILDLKKLYCNDIHAMANTYGIEAALKVLEKEIKDVFAVYGI
AVDPRHLSLVSDYMCFEGVYKPLNRFGMQSSSSPLQQMTFETSYKFLKEAAMLGSHDELQ
SPSACLVVGKVVKGGTGLFDLKQPLK
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgagggaagcgccgtggcgccggctgactggcctgaccttcggcgtgtat
cgggcggcggaaatcgagaagctgagtgtaaaatcaataaccaacccacgtttcctggat
aatgcaggcactgcattacccaatggattgtacgacttggctttgggaccacttgacaac
aaggaagtgtgtgcaacttgtgtacaggacttcaacaactgtccagggcacctaggttac
acagatctgcctctcactgtctataatcctctcttttttgataaattattccttctgata
cgaggttcttgcttgagctgttgccatctgacatgtcctcgtgctgtgattcatttattg
cttaaccagctgaagctcttggacgtaggactgcttgaagctgtgtatgaccttgaggct
gtcctaagcaggtttttagaggaaaatgcaggcgcacttgagatagacatagaagaaatg
ttaagccagcacacaaaagaaattctccaaaataaccagctaaaggaccaaggttcaaat
gtaaaaaacgtatgtgagtgtaaaagtaaactgatatcccagttttggaaatcgcacaca
agttcaaagagatgccccaactgcaaagctgaaagatcacttgtccgaaaagaacataat
agcaaactcactgtgacttatcccaccgtggtaatccagaagtcaggcaaacagatgatt
gtggaggaagctgcaatcatagatgaaactcaactgggaaagcgaggttacctgacacct
agcagtgccaaagcccatattgaagctttgtggaataacgaaggttttttcctctccaaa
cttttctctggtatgatggtcagtgaagattcacatttcaatcctgagatgttctttctg
gataaacttgttgttccaccatctaggtatcgtccagtgagttttgttggagaccagatg
tttgcgaatggtcagacggtgaacttgcaagctgttatgaaagatgctcagttagcacgg
aaacttttggctttcatggctcaagatctgaagcaatcaatgcaaagtgaagagggagaa
atccagaagccaggggagcagcccttggaactcctggaccgttctgtcttggtgacaatc
cctgggcagacagtggcagataagctttacaacatctggattcgtcttcagagccatgta
aatattttgtttgacagtgacatggacaagctcatgtctgaaaaattccccggtgtgcga
cagattttagaaagaaaggagggcctgtttcgcaagcatatgatgggcaaacgagtggat
tatgcagctcggtcagtcatttgccccgacatgtacattgggaccaatgagattggcatt
cctatggtctttgctacgaaactgacctatcctcaacctgtaactccttggaacgtccat
gagctgaggcaggctgttataaatgggcctggtgtgcacccaggtgcctccatggtcatc
aatgaagatgggtctcgcaccatcttgagttcaaccagtcagacccaaagagaagccata
gccaagcaactcttaactccttccactggggcaccaaaaccaggaataaaaacagtgtgc
cgccatattaaaaatggagatgtccttttgctgaatcgccagcccacccttcatagaccc
tctatccaagctcatcgagccaggattcttcccgaagagaaggttctgaggcttcattat
gccaattgtaaagcttacaatgctgactttgatggggatgaaatgaatgctcacttccct
cagaatgagctaggtcgagcggaagcctatgtcttggcttgtactgatgagcagtatctt
gttccaaaggatgggaagccattagcaggcttgatccaggatcacatggtctctggtacc
agcatgaccacacgaggctgcttctttacccgagaacagtacatggaactggtgtatcaa
ggactgaccgacaaaaagggaagagtgaagcttctgcctccagctattataaagccacat
cctttgtggacgggaaagcaggttgtttctacattgcttacaaatgtaattccagaggac
tggcctctgctgaatttgtcaggaagagctaaaattgatggaagagcctgggtgacagcc
tctggcccaggaatttacccatcaggtcttgactttatgtgtgaatctcaggttatcatt
caaaatggggagctgctctgtggggtcttggacaaagctcactatggtagctctgcctat
ggtttggtccactgctgccatgatgtctatggtggtgagacgagtggaaaagtgctgacg
gctctggctcggctcttcacagcctacttgcagttctacaggggctttacaatgggagta
gaagatattttggtcaaaccaaaagcagaccacagaagacggaagatcatgaaagaatgt
acccgttgtggttcaaaggccattaaagctgcatttaacttgccagaaacctcctcaggt
gagcaggccagagggaagtggcaggatgcccacctccacaaagaccagagaaactttaat
atggtcgatctgaaattcaaagaggaagtgaaccattacagcaatgaaattaacaaggtg
tgcgtgcctctagggcttcaccggagtttccctgagaataatttgcagttgatggtgcag
tcaggggccaaaggatctactgtgaatactatgcagatttcttgcttgctgggccagatt
gagttagaaggtcgaaggcccccgttaatgccgtctggcaaatcgttgccatgttttcag
ccttacgacttttccccccgatcgggaggatttgtgactgggagatttctcactggcatc
aagcctgcagaattcttctttcattgcatggctggtagagagggactggtggatactgct
gtcaaaaccagccgatctgggtaccttcaaaggtgtattataaagcatttggaagggctg
atagttcattatgacctgactgtacgagacagcgatggcagcattgtgcagtttctctat
ggagaagatggcttaaacgttcctaaaatacaattcctgcaacccaagcagtttcctttc
attgcagataacttcaaggtaatagagaaatctaaacatttagatgaagttctgtcaaaa
atggaccctcggcatgcaaaggaacagttcaggtccatcaagagatggcaagtcaagcac
cagcagactctcagaaaaggagcctttttgctgttttgtcagaaaaaaatggcaagtgta
atggcccagatccctacaggagaacttgaaaatagtcgagaaactaaaactctacagttg
ttgaagatgtggtatggactgaatgagacgagacggagcaagtatcagaaaaaggcagca
aaatgtcctgatccctgcctgggtatctggcagccagacatctattttgcatcggtgtca
gaaacatttgaaaatgatgtagagaatttccttacagaatggaacactcggaatgaccgc
ggctattgtaaatctgaactttcttcggagagattaaaggacttgttgcatttaaagtgg
cagcagtcactctgtgacccaggagaagctgtgggtctccttgctgctcagagcattgga
gagccctccacacagatgactctgaacactttccactttgctggaagaggcgaaatgaat
gttactctcggtatcccaaggttgcgggagatcctgatggtagccagtactaatattaaa
accccaatgatgagtattcctgtccttaataccaagagagctcataagagggtgaagaga
ctcaagaaacagcttactagagtgtgcttaggcgaggtgttacagaacgtggatattcag
gagtcaatgtgtttggagatgaatcttaacaagcacctcgtctacactatcaaatttact
tttttgccacatgaatgttatggggatgagatatgcgtgaagccaaggaacatcttgaac
tttatggagacaagtttcttcaaaatcttactggaaacaattaagaggaagagttcaaag
ctgatctcatataacaatgttggtactcagcgagcaaatcatagggacttaggtagtgat
ggaaaagttggagcatcccaagaaaaccaggatgaccaagaagctgaggaagaagggaga
gtacctgatggagaaattgatgaaggggatgctgatgctacagatgcaaaaagaagggag
aagcaggaagaggaggttgattatgagagtgatgagggcgctgtggaggaggatgaaatt
ccggataaggaagaggctgcactgtgtgacggtgacagggatccagaagcagctgaaact
caggaagatacttctgcccctttctctaatgagcagtttcagaacaagagaaagactttg
gataagttgactgatcacagagttaataccgtactggagagtcacagtgctattgaaagc
tatgcatatgacacagataacgaactgtggtgtgaggtcactttgaaacttccactgtca
aaggagtacttcgacttggcttccctgctgacttccctggcaaacaaaacagttatccat
gagaccaaggggatcacacgatgtctcttaaatgaaaccaccatcaaaaaagaagagaag
gcactcatgttacaaacggaagggataaaccttcctgagctcttccaatacactgacatt
ttggatttgaagaagctttattgcaatgatattcatgcaatggctaatacttacggcatc
gaggctgccttgaaagtccttgagaaagagattaaagatgtgtttgctgtgtacgggatt
gcagtagatcctcggcatctctctctggtgtctgactacatgtgctttgaaggtgtttac
aaaccacttaatcggtttggtatgcagtccagttcttctccattgcagcaaatgacattt
gagaccagctacaagttcttgaaggaagcagcaatgctgggctcccatgatgagctacaa
tctccttctgcttgcctagtggttgggaaagttgtcaaaggaggaactggattgtttgat
ctcaagcagcctcttaaatag
DBGET
integrated database retrieval system