KEGG   Eublepharis macularius (Leopard gecko): 129343234
Entry
129343234         CDS       T09084                                 
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
emc  Eublepharis macularius (Leopard gecko)
Pathway
emc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:emc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    129343234 (SNRNP40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:emc03041]
    129343234 (SNRNP40)
Spliceosome [BR:emc03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    129343234 (SNRNP40)
 Complex C
   U5 SnRNP specific factors
    129343234 (SNRNP40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_SPT8 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_IFT122_1st Beta-prop_RIG_2nd WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WDR54 WD40_like PROPPIN
Other DBs
NCBI-GeneID: 129343234
NCBI-ProteinID: XP_054855314
UniProt: A0AA97KH44
LinkDB
Position
15:complement(42505927..42519396)
AA seq 359 aa
MIDPQKRKAPGPEMALVAAASAAKKPRHELILGAGPAGGQPPPGALLQTGPPRCSSLQAP
IMLLSGHEGEVYCCKFHPNGATLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYN
TDGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKL
WDIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSV
TGLSLSSEGSYLLSNAMDNTVRIWDVRPFAPKERCVKILQGNVHNFEKNLLRCSWSPDGS
KIAAGSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPEEPIILSASSDKRLYMGEIQ
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgatcgacccgcagaagcgcaaagcgcccggcccggagatggcgttggtagcggcggcg
tccgcggccaagaagccccgccatgagctgatcctgggagcgggacccgccggagggcag
ccgccgccgggcgccttgttgcagacgggtccaccaagatgttcctccctccaggcaccc
atcatgttgctttccgggcatgaaggtgaagtgtactgttgcaagtttcatcctaatgga
gccaccttagcatcagctggatttgacaggctgatcttgctatggaatgtgtatggtgat
tgcgataattatgccaccctgaaaggacatagtggagctgttatggagctgcactacaac
actgatggcagcatgctattctctgcctccacggataaaacagtagcagtgtgggatagt
gagacaggcgagagagtaaaaaggctcaaagggcacacatcgtttgtgaactcttgttat
ccggcgcggcgtgggcctcagttggtttgcacaggcagcgatgacgggacagtaaagcta
tgggacatcagaaaaaaagctgctgttcagacttttcaaaatacttaccaagttttagct
gtcactttcaacgataccagtgaccagataatatctggcggcatcgacaacgatatcaag
gtgtgggaccttcgacagaacaagctaacgtatacaatgagaggacatgctgactccgtc
accggactcagtctcagttcagaaggatcttacttgctttccaatgcaatggacaataca
gttcgcatctgggatgtccggcccttcgcccctaaagagagatgtgtgaagatacttcaa
gggaatgtgcataattttgaaaagaatcttctgcgatgttcttggtcaccagacggaagc
aaaatagcggctggatcggcagacaggttcgtttatgtgtgggatacaacctccagaaga
atcctttacaagctgccaggtcacgctggttcaataaacgaagtggcttttcatccagag
gaaccaatcattctttcggcatctagtgacaaaaggctgtatatgggagagatccagtga

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