Eublepharis macularius (Leopard gecko): 129344944
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Entry
129344944 CDS
T09084
Symbol
BRIP1
Name
(RefSeq) Fanconi anemia group J protein
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
emc
Eublepharis macularius (Leopard gecko)
Pathway
emc03440
Homologous recombination
emc03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
129344944 (BRIP1)
03460 Fanconi anemia pathway
129344944 (BRIP1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emc03400
]
129344944 (BRIP1)
Enzymes [BR:
emc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129344944 (BRIP1)
DNA repair and recombination proteins [BR:
emc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
129344944 (BRIP1)
FA (Fanconi anemia) pathway
Downstream FA components
129344944 (BRIP1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
ResIII
HBB
ARCH_RTEL1
Motif
Other DBs
NCBI-GeneID:
129344944
NCBI-ProteinID:
XP_054857838
UniProt:
A0AA97LIS4
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Position
17:33162254..33319785
Genome browser
AA seq
1192 aa
AA seq
DB search
MASTVSEYTIGGVKILFPCKAYPSQLAMMNAIVKGLNSKQHCLLESPTGSGKSLALLCSA
LSWQQSLYEEASKVTLSSKLSAKKQASLQEAEDDFKVDRKRIRSLETEEQARKRNRLAKG
VQFVDALEVYQQQKNGELTVCSKETVPFSLKTLQPSRSCTQCSCSSVGGNAKAAIAEKKK
ENTEKPFVPKIFFGTRTHKQITQITRELRRTAYSGTRMTILSSRDHSCVHPTVAGCSNKN
EKCVELLEGKDGICCSYYHGVHKLSEHHTLQFARKNSQAWDIEDLVRLGKKLRSCAYFAA
RELMEEAEIVFCPYNYLLDSQIRASMEINLKGQVVILDEAHNIEDCARESASYSVTEAQL
KLAREELDAMVNGNIRRKDHEPLRAVCCSLTNWLRETSGQLVERGYETSSKVWSGQQMVA
FLHNMGITNATFPILQKHFAAVLEKEEKITQFHGKEEVLLVPVISPSTQITLKGLFMVLF
YLFKENHRYADDYRVALQQTYVWRNENMVDPEDANGFFTRAKRKSRHKTAVQMLSFWCLN
PAVAFSDVSDNVRSIVLTSGTLSPMDSFSSELGVKFSIQLEASHVIRDSQVWVGTVGAGP
KGRSLCATFQQAETFEFQDEAGVLLLSICQTVGQGVLCFLPSYKMLDKLKDRWLHTGLWE
KLELIKTVIVEPKGGDKADFDKLLQIYYDAIKCKQGKDGALLLAVCRGKVSEGLDFSDDN
ARAVITIGIPFPNVKDLQVELKRKYNDQHSKVRGLLPGSQWYEIQAYRALNQALGRCIRH
RSDWGALILVDDRFGRNPNKYIAGLSKWIRQQIRHHENFECALGSLEMFTKKNQKGIESS
VQGNGESLFMTSSLTAPSTSSFLEATLHLTPDVTLERGSQNVPETLSAADVNTTNPAMSS
QSCDIFAKKKSDCPSYQTIKQKNLTDSKSSTSTIGNKRGKVNSHPISGNIKQYFSKMLTS
TPLPAKSKKNTSKATWQPRGPTAQTCHLATNGCQQELSLVEEDRRCELAPCREVISCSSG
EVTGSVLQEYAAEQQLCIHEDRGDVAVSPVRGNAELSTSVITVETDADDDSIYFTPELYD
ESAEEKNELLAHTSRDTGTLSELAGSVEAEELSEVGAPKLVDAAVGMQTDAAAEAGRYGI
MQSNMSHGGAVRAAVRSASIGEAEREEETQKKRNKLSRSRNKSLSVFQSRGR
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacagtctctgagtacactatcggaggagtgaaaattctcttcccctgcaag
gcctatccttcacagctggctatgatgaatgcaattgttaaggggctaaactccaagcag
cactgcttattggagagtcctacgggaagtgggaaaagcttggcattgctttgctcagca
ttgtcctggcaacagtctctgtatgaagaggcctcaaaagtcacactttcttcaaaacta
tctgcaaagaagcaagcatctttgcaagaagccgaagacgattttaaagtggataggaaa
agaattcgttcattagaaactgaagagcaggctaggaaacgaaatcgactagccaaagga
gtgcagtttgtcgatgctttagaagtttatcagcagcaaaaaaacggggaattgactgta
tgctccaaagaaacagttcctttctctctcaaaacgttacagccttcccgttcctgcact
cagtgttcctgttcttctgtggggggaaacgctaaagctgccattgctgaaaagaaaaaa
gaaaatacagagaagccgtttgtccccaaaatattttttggaacacgaacgcacaaacag
atcacacagatcactagagaattgcggaggacggcatattctgggacccgtatgacgatt
ctgtccagtagagaccattcctgtgttcacccaacagtagctggttgcagcaacaagaat
gaaaaatgtgtagagttactggaaggaaaggatggcatatgttgttcttactaccatgga
gttcataagcttagcgaacatcacaccttacagtttgcacgcaagaactctcaagcttgg
gacattgaagatctagtgcgtctaggaaagaaactgcgttcctgtgcctattttgcagct
cgggagcttatggaggaagctgagatcgtgttttgcccttacaactatcttttagactca
caaataagagcgagcatggagattaacttgaaaggccaagtggtcattttagatgaagct
cataatattgaggactgtgcacgggaatcagccagctacagtgtgacagaagctcagctc
aagttggctcgagaagagctggacgccatggttaatggcaacattcggaggaaggaccac
gagcccttgcgtgctgtgtgctgcagcctgacaaattggttaagggaaacttctggtcag
ctcgtagagagaggttatgaaacatctagtaaagtttggagtggacaacaaatggtggca
ttcttgcacaatatgggtataaccaatgctactttccccatcttacagaaacattttgca
gctgtccttgaaaaggaagaaaaaataacacagtttcatgggaaagaagaggtgctttta
gttccagttataagtccttcaactcagattacactaaaagggctgttcatggtcctattt
tatctttttaaagaaaatcacagatatgcagatgattatagagttgccttgcagcagaca
tacgtctggagaaatgaaaatatggttgaccctgaagatgccaatggcttttttacacga
gccaaaagaaaatcgcgacacaaaacagctgtgcagatgctaagcttttggtgcttgaat
ccagctgtggcattctcagatgtgagtgacaacgtcagatcgattgttttaacctctgga
acactttcgccaatggactcattttcttcagaacttggtgtgaaattttccattcagctt
gaagcgagccatgttattcgggactctcaggtgtgggtcggtactgttggagcaggcccc
aaaggcaggtcactgtgtgctactttccagcaggcagaaacgtttgaattccaggacgaa
gcgggggttctcctgctttccatctgccagacggttgggcaaggggtgctgtgctttctg
ccatcttacaagatgttggataaactgaaagatcgctggttgcacaccggcttgtgggaa
aagctggagctgattaagactgtcattgtggagccgaaaggaggtgacaaagctgatttt
gataagcttctgcaaatatactacgatgctataaaatgtaaacaaggaaaagatggtgcc
cttcttctcgctgtctgcagaggcaaggtcagtgaaggcctggatttctccgatgacaat
gctcgtgctgttataaccatagggattccattcccaaatgtgaaggaccttcaggttgag
ctgaaaaggaaatacaatgaccagcactccaaagtgaggggccttttgccaggtagccag
tggtatgaaatacaggcctaccgagctctcaaccaagccctgggccggtgtattcgtcac
aggagtgattggggcgcactcattttagttgatgaccgcttcggacggaaccccaataaa
tacatagctgggctatccaaatggattcgtcagcaaatccggcatcatgaaaacttcgag
tgcgctcttggttctttggaaatgtttactaaaaaaaaccaaaagggcattgagtcttca
gttcagggcaatggcgagtctctgttcatgacttcaagtttgacggctccatcgacgagt
tcttttctggaggcaactcttcatctaacgcctgatgttactcttgaaagaggatcacaa
aacgtcccagaaacactgtctgctgcagatgtcaacacgaccaacccagcaatgtccagc
caatcatgcgacatctttgcaaagaaaaaaagtgattgcccatcttatcagacaataaag
cagaaaaatcttaccgactccaaatccagtacttccaccattggaaacaagagggggaaa
gtaaacagtcatcccatctctggtaatataaaacagtattttagcaaaatgctgacatca
acacctctgcctgcaaagagtaagaagaacacttccaaagcaacatggcaaccaaggggg
ccaactgcccaaacctgccatcttgccacaaatggatgccagcaggagctgtcactggtt
gaagaagacagacgatgcgagctggcaccatgcagagaagtgattagctgctcttcagga
gaagtgactggctcggtccttcaagaatatgctgctgaacagcagctgtgcattcatgaa
gacagaggagatgtggccgtttctccagtgagaggaaacgcagaactttcaacatcggtc
ataactgtagaaacagatgctgatgatgacagtatctatttcacaccggaactttatgat
gagtcagcagaagaaaaaaatgaattgctggctcacacttctcgtgatactgggacttta
tccgaacttgctggttccgttgaagctgaagagctgtcagaagtaggtgccccaaaactg
gtagatgcagcagttggcatgcagactgatgcagcagcagaggcgggacgctatggaatc
atgcaaagcaatatgagtcatggcggtgcagtcagagcagctgtacgtagtgctagcata
ggtgaagctgagcgggaagaagagactcagaaaaagagaaataaactttccagatcaaga
aacaaaagtttgtctgtctttcagtcaaggggtcgttaa
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