Exiguobacterium mexicanum: ACNOIU_09115
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Entry
ACNOIU_09115 CDS
T11248
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
emex Exiguobacterium mexicanum
Pathway
emex03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emex00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACNOIU_09115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emex03019
]
ACNOIU_09115
03400 DNA repair and recombination proteins [BR:
emex03400
]
ACNOIU_09115
Enzymes [BR:
emex01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACNOIU_09115
Messenger RNA biogenesis [BR:
emex03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ACNOIU_09115
DNA repair and recombination proteins [BR:
emex03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ACNOIU_09115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
AAA_30
AAA_22
TniB
Motif
Other DBs
NCBI-ProteinID:
XPL65424
LinkDB
All DBs
Position
complement(1727162..1728589)
Genome browser
AA seq
475 aa
AA seq
DB search
MRHLFEKTLKRVFGYDSFRPGQREVIEAVADGQDVLAIMPTGAGKSLTFQLPSYIKNDGL
TIIVSPLLSLIEDQMLHIRERGERGVARLTSMETLEEKQEILNHLKRYRFLYLSPEQLAV
PHVTRALARTKIQMLVVDEAHCISQWGHEFRPEYARLGELRKQLGSPQCMAVTATAPETV
KRDIVEKLALFSPAQFVHSANRPEIRLIVERLGSEDKMRRLSELVHDVPKPAVIYTATRR
EAEALALHLDDALFYHGGMSTEDRRLVQSQFLRDEVAIMVCTSAFGMGVNKDNVRSVIHY
QIPATLEAYMQEIGRAGRDGEPAFAVLLYAEGDERIQQFLIDQQYPKDKDIRLAYFERDN
GTSLAQLPRLLRLNEEDPVWGLLNQMLAERTLAEAVDWVKDRKRARYRQLGQMMDYALIK
TCRRDYLLNYFSEQPVKQSDCCDICGEIVFPPSEQLVSKNVTDWKHRLARIFSFD
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgagacatttgtttgagaagacgttgaagcgagttttcggttatgacagtttccgtccg
ggacagcgcgaggtgatcgaagcggtcgccgatgggcaggacgtgcttgccatcatgccg
actggtgccgggaagtcattgacgttccaactcccgtcctatatcaaaaacgacgggttg
acgattatcgtctcgccgctcttgtcactgattgaggatcagatgctccacatccgcgaa
cgcggcgaacgcggggtggcgcgattgacgtcgatggagacgctcgaagagaagcaagag
attttaaatcatttgaaacggtaccgcttcttgtatttatcgccggagcaactcgctgtg
ccccatgtgactcgggcgctggcgcggacgaaaattcaaatgctcgtcgtcgacgaggcg
cactgcatctcgcagtggggccatgagttccggccggagtatgcgcgcctaggtgaactg
cgcaaacagctcggcagtccgcagtgtatggccgtcacggcgaccgcgcctgagacggtg
aaacgagatattgtcgagaaactggcgctcttctcgccggcgcagttcgtccactcggcg
aaccgtcccgagattcgcctcatcgtggaacgtctcgggtcagaagataagatgcgtcgt
ctgagtgaactcgtccacgacgtgccgaaaccggccgtcatctatacggcgacacggcgt
gaggccgaagcgctcgccctccatctcgatgacgccttgttttatcacggtggcatgtcg
accgaggaccggcgccttgtgcagtcacaatttttacgtgacgaagtcgccatcatggtg
tgtacgagtgcgttcgggatgggtgtcaataaagataacgtccgttccgtcatccattat
caaatcccggccacgctcgaggcgtacatgcaagagatcggtcgggctgggcgtgacggt
gagccggctttcgcggtcttgctatacgccgaaggggatgagcggattcaacagtttttg
attgaccagcaatatccgaaagacaaagatatccgtctcgcttattttgaacgagacaat
ggcacgagcctggcccagttgccacgcttattgcgcttgaacgaggaagacccggtttgg
ggactgttgaatcagatgcttgccgagcggacgcttgccgaggcggtggattgggtaaaa
gatagaaagcgggcccggtatcgtcaactcgggcagatgatggactatgccctcatcaag
acgtgccggcgcgattatttgttaaattatttctcggagcaaccggtcaagcaaagcgat
tgttgcgacatctgcggcgaaatcgtgttcccgccgtcggagcaacttgtgtctaaaaat
gtgacagattggaaacatcggttggctcgtatcttttcctttgattga
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