Exiguobacterium mexicanum: ACNOIU_12030
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Entry
ACNOIU_12030 CDS
T11248
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
emex Exiguobacterium mexicanum
Brite
KEGG Orthology (KO) [BR:
emex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
emex03016
]
ACNOIU_12030
Enzymes [BR:
emex01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
ACNOIU_12030
Transfer RNA biogenesis [BR:
emex03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
ACNOIU_12030
Prokaryotic type
tRNA splicing ligases
ACNOIU_12030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF2002
Motif
Other DBs
NCBI-ProteinID:
XPL65970
LinkDB
All DBs
Position
complement(2291244..2292422)
Genome browser
AA seq
392 aa
AA seq
DB search
MEIIGKHNRAKVFNERIDDMTRAQIQTLVDQPFTQGASIRIMPDMHAGKGSVVGTTMTIH
DKVVPNLVGVDLGCGMLCTEIKVKRIDFQRLDDVIRQYVPSGMNIRDAAHPYASELPLED
VRAPYKLDRALRSVGTLGSGNHFIEVNRDEAGRTFLVIHSGSRHLGVQIADHYQQLAVEH
MMKTADIRDEIERMKATGRERDIAAYLETEREARKHVRDLAYVEGEAMEDYMHDVRIAQQ
YAAANRLAMTDVIVEAMNWNVVDQFDTVHNYIDHDAMMLRKGAISARDGERVIIPMNMRD
GSLICTGKGNPDWNFSGPHGAGRVMSRSAARKRVDFNEFKKSMADVWSSSVRPSTIDESP
FVYKSMKEIVRYIEPAVTINQIIKPLYNFKAN
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggagattatcggaaagcataaccgggccaaagtattcaatgaacggattgacgatatg
acgcgggcccaaatccaaacgctcgtcgaccaaccgttcacgcaaggtgcctcgattcga
atcatgccggacatgcatgccggcaaagggtcggtcgtcgggacgacgatgacgattcac
gacaaggtcgtgccgaatctcgtcggtgtcgacctcgggtgcggcatgctctgtacggaa
atcaaggtgaagcgcatcgactttcaacggctcgacgacgtcatccgtcaatatgtaccg
agcgggatgaacatccgggatgcggcacacccgtacgcctcagaacttccgctcgaggac
gtgcgggcgccgtataaactggaccgggccctgcgctcggtcggcacgctcggctcgggc
aatcacttcatcgaagtgaaccgcgacgaagctggacgcacgtttctcgtcatccattcc
ggctcgcgccacctcggtgtccaaatcgccgaccattatcaacagttggcggtcgagcac
atgatgaagacggctgacattcgagacgagattgaacggatgaaggcaacgggacgagag
cgggatatcgcggcctatcttgagacggagcgcgaggcacggaaacatgtccgcgacctc
gcctacgtcgaaggggaagcgatggaagattatatgcacgacgtgcgtatcgcccagcaa
tatgcggccgccaaccgtctcgccatgaccgacgtcatcgtcgaggcgatgaactggaac
gtggttgatcaattcgatacggtccacaactacatcgatcacgacgcgatgatgcttcgg
aagggggccatctcggcgcgggacggcgagcgggtcatcattccgatgaacatgcgcgac
ggctcgctcatctgtactggcaaggggaacccagactggaacttctcgggaccacacggc
gccggtcgcgtcatgtcacgctcggccgcgcgaaaacgtgtcgacttcaacgaatttaaa
aagtcaatggcagatgtctggtcaagttcggtccgaccatcgacgattgacgagtcaccg
tttgtctataagtcgatgaaagagattgtccgttatatcgagccggccgtcaccatcaat
caaatcatcaaaccgctctacaacttcaaggcgaactga
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