Exiguobacterium mexicanum: ACNOIU_12095
Help
Entry
ACNOIU_12095 CDS
T11248
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
emex Exiguobacterium mexicanum
Brite
KEGG Orthology (KO) [BR:
emex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
emex03009
]
ACNOIU_12095 (rlmD)
Enzymes [BR:
emex01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ACNOIU_12095 (rlmD)
Ribosome biogenesis [BR:
emex03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ACNOIU_12095 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_25
Cons_hypoth95
MTS
XAP5
TRM5-TYW2_MTfase
Methyltransf_12
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
XPL65983
LinkDB
All DBs
Position
complement(2305464..2306840)
Genome browser
AA seq
458 aa
AA seq
DB search
MKLIVGEYTSAQAERLGINGEGIATIDRMVIFIPNLLPGEKAKVEITRVERNYAEARVIK
RDNDSPDRVKPPCPIYDECGGCQIQHMSPSLQMDYKEEIVRNAFRQKTKLNVDKSDIRGT
KGMDKPWYYRNKSQFPLSTRRGEIVSGLYKPNTNELVPIEHCMVQQRDTTNINNAIVRIL
NELDIPVYDARRDVGFARTVIVRSGYKTDDVQVVLVVGNEDVPRLDELSDRIMALPNVVS
FHLNINSNRSGVIFGYRTVHIAGQDKMDEQLDDVHYHLSPRAFFQLNPAQTEVMYREVVE
AAGLTGEERVIDAYAGVGSIGLWLAPHAKEIRGMEVVPEAVEDANAHMRENGFSHATYVE
GRAEHWIPRWVKDGWIPDVIVVDPPRTGVDHQLLNAMISSKAKRIVYVSCNPQTLARDAD
QLMKADYKINYIQPYDMFPQTAHVESIVVFEKKKKKKY
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
ttgaaactgatcgtaggagaatacacaagcgcccaagccgagcggctaggcattaacgga
gagggcatcgcgacgattgatcgtatggtcatcttcatcccgaacttattgccaggagag
aaggcgaaagttgaaatcacgcgcgtcgagcggaactacgccgaggcacgcgtcatcaag
cgcgacaatgattcaccggaccgggtcaagccaccatgtccaatttatgacgagtgtggc
ggttgccagattcaacatatgagtccgagcctgcagatggattataaagaagaaatcgtc
cgcaacgcgttccgtcaaaagacgaaattgaacgtcgacaagtcggatatccgtggtacg
aaagggatggacaaaccttggtattaccgcaacaaatcgcaattcccgctctcgacgcgc
cgcggtgaaatcgtgtcagggctctacaagccgaacacgaatgagctcgtgccaatcgaa
cactgcatggtgcagcaacgcgacacgacgaacatcaacaacgccatcgtccgtatttta
aatgaacttgatatcccagtatacgatgcgcgccgtgacgtcggttttgcccgtaccgtc
atcgtccgctcgggctataagacggatgacgttcaagtcgtactcgtcgtcgggaatgaa
gatgtcccgcgtttggacgaactgagtgaccgcatcatggcgttgccgaacgtcgtgtcg
ttccacttgaatattaactcgaaccgttcaggcgtcatcttcgggtaccgcacggttcat
atcgccgggcaagacaagatggacgaacagcttgacgacgtccattaccacttgtcaccg
cgtgcgttcttccaactcaatccggcccagacggaagtcatgtatcgggaagtcgtcgag
gcggctggactgacgggtgaagaacgggtcatcgatgcgtacgctggtgtcggttcaatc
gggctatggctagcgccacatgcaaaagagattcgcgggatggaagtcgtcccagaagca
gtcgaagatgcgaatgcgcacatgcgcgagaacgggttcagccatgcaacctatgttgaa
ggccgggccgagcactggattccgcgctgggtcaaggacggttggattccagatgttatc
gtcgtcgatccgccgcgcacaggtgtggatcatcagctccttaacgcaatgatctcatcg
aaagcgaaacgcatcgtctacgtgtcatgtaacccgcagacactcgcacgggatgcggac
caactcatgaaagccgactataaaatcaactatatccagccgtacgatatgttcccacag
acggcgcacgtcgagtcaatcgtcgtcttcgagaagaagaaaaagaaaaagtattga
DBGET
integrated database retrieval system
