Elizabethkingia meningoseptica: BBD33_02440
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Entry
BBD33_02440 CDS
T04744
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
emg
Elizabethkingia meningoseptica
Pathway
emg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBD33_02440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emg03021
]
BBD33_02440
03019 Messenger RNA biogenesis [BR:
emg03019
]
BBD33_02440
Transcription machinery [BR:
emg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
BBD33_02440
Messenger RNA biogenesis [BR:
emg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
BBD33_02440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
AAA_22
AAA
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AQX04175
LinkDB
All DBs
Position
complement(512092..513876)
Genome browser
AA seq
594 aa
AA seq
DB search
MFDIESLKSKSDTELTKISKDLGIGVKKTSDINEKIYAILDFQASNPQMIKDYFGSPNKD
NVAEGDVPQPKKRGRKPAAKTEVKESNEEAEVAVPEETPVKKDTRKKVTTNTEVAKPAEE
VVQPQQPEKKQRKRVTKPATSSTPSTTSAPAEEKPTQEEPVSKVSEPTEAPVKKETPAAP
QQKNNNNNNQNQNQNKQNHHNNNHNKDKNGDTRTNEPQKKDYSFDGIVTVEGVLEILPDN
YGFLRSSDFSYISSPDDVYVSTSQIKNYGLKTGDTVKGIVRLPKEGEKYFSLQRPTEVNG
RDLAYIKDRVAFEFLTPLFPQEKFNLAGKNATLSTRIVDLFAPIGKGQRAMIVAQPKTGK
TMLLKEIANSISANHPEAYMMVLLIDERPEEVTDMQRSVNAEVIASTFDEAADKHVKVAN
LVLSKAQRLVECGHDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHKPKRFFGAA
RKIEGGGSLTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRKIANKRIYPAVDLIASS
TRRDDLLHDELTQQRMWILRKYLADMNPVEAMEFVQKHMKSTLNNEEFLMSMNK
NT seq
1785 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacattgaaagtctaaagtcaaaatcggacaccgaattgactaaaatctcaaaa
gatttaggaattggtgtgaagaaaacctccgatattaatgaaaaaatttatgcaatattg
gattttcaagcatctaatccacagatgattaaggactactttggttccccaaataaggac
aatgtagcagaaggcgacgtgcctcagcctaagaaaagaggccgaaagccggcagcgaag
acagaagttaaggaaagcaatgaagaagcagaagttgccgtcccagaagaaactcctgta
aaaaaggacacaaggaagaaggttacaaccaacacagaagttgctaaacccgcagaagaa
gtggtacagccacaacaacctgagaaaaagcaacgaaaaagagttaccaaacccgctaca
tcttctactccttctacaacttcagcgcctgcagaagaaaagccgactcaggaagagcct
gtttcaaaagtttcagaaccaactgaagctcccgtaaagaaagaaactcctgctgctcct
cagcaaaaaaacaacaacaataacaatcagaatcagaatcagaataaacagaaccaccat
aataataaccataacaaggataaaaatggtgacaccagaacaaacgaacctcagaaaaag
gactacagcttcgatggtatcgttacagtagaaggtgttctggaaattctgccggataat
tatggcttcctaagatcttctgactttagttatatatcgtcaccagacgatgtatatgtt
tctacaagccagattaaaaactacggattaaaaaccggtgatactgtaaaaggtattgtc
cgtttacctaaagaaggagagaaatatttttcactacaacgtccgacagaagttaacgga
agagatttagcttacataaaagatcgtgtagcttttgaattcctaaccccgcttttccct
caggagaaattcaatttggcaggtaagaatgcaacactttcaacaagaattgtagatctt
tttgcaccaattggtaaaggacagcgtgcgatgattgttgcacagccgaaaaccggtaaa
acaatgttgctgaaagaaattgccaatagtatctcggcgaaccacccggaagcctatatg
atggtattgctgattgatgaaagacctgaagaggtaacagatatgcagagaagtgtaaat
gcagaagttattgcatctacatttgatgaagcggcagataaacatgtcaaagtagcgaat
ctggtactttccaaagcacaaagactggtagaatgcggacatgatgttgtaatcctgtta
gattcaattacgcgtctggcaagagcatataataccgtgacgcctgcttccggaaaaatt
ctttcagggggggtggatgcaaacgcattacacaaacctaaaagattctttggtgctgca
agaaaaattgaaggtggtggttcattaaccattattgcaacagcattaatagatacggga
tctaaaatggatgaggtgatctttgaggaattcaaaggaacaggtaacatggagcttcag
ttagacagaaagattgcaaacaaacgtatttacccggctgtagatcttattgcttcaagt
acacgtagagatgatttgttgcatgatgagctgacgcagcagagaatgtggatattgcgt
aaatatcttgctgatatgaaccctgtggaagctatggaattcgttcagaaacacatgaag
tctactctgaataatgaagagttcttaatgtctatgaataaataa
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