Elizabethkingia meningoseptica: BBD33_04230
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Entry
BBD33_04230 CDS
T04744
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
emg
Elizabethkingia meningoseptica
Brite
KEGG Orthology (KO) [BR:
emg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
emg03016
]
BBD33_04230
Enzymes [BR:
emg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BBD33_04230
Transfer RNA biogenesis [BR:
emg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BBD33_04230
Prokaryotic type
tRNA splicing ligases
BBD33_04230
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AQX06971
UniProt:
A0A1T3I773
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All DBs
Position
885899..887290
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AA seq
463 aa
AA seq
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MGNLKLKGKDILKLGYPNNQSVNIALEVMKRNFATKNIHYVKSLLKEILSNPENFEKDLT
FGQIAEALLSSRKTEKRLLNTHRASFQIFGNNISDEAKNQLYTALKLPIAVQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPVSYLDGAKDKYEKALSDHTKFG
MYETHKSHIDHEIFERDTFNLIPVLRRLKAKAIKQMGTSGGGNHFVEFGEVEITEEDEQI
GLPKGKYLGILSHSGSRGLGAEIAQYYSRVAAEQCPLPKEAKQFAWLDLNTHLGLEYWTA
MNLAGDYAAACHDDIHRRLIKAVGGRIKARIENHHNFAWKEIHNRKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNPDSLTSASHGAGRLYSRGECRSLFTQSDIKNELKLKKV
ILMGGNAEEAPMAYKDINEVMNAQSELVDILGTFQPRIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaacttaaaggaaaagatatattgaaactgggctatccaaacaatcaa
agtgtaaatattgctttggaagtcatgaaaagaaattttgcaaccaagaatattcattat
gtcaaatcccttctaaaagagattctgagtaatccggaaaactttgaaaaggatctgaca
tttggacaaatagctgaagccttgctttcttcaagaaaaactgaaaaaagactactgaat
acacatcgggcttcctttcagatattcgggaacaacatttcggatgaagcaaaaaaccag
ttgtacacagcactaaaattgccaatcgctgtacagggggctttaatgcccgatgctcat
agcggttacggacttccgatcggtggtgttcttgcggtagaaaacgcagtaattccttat
ggagtaggaatggatattggctgcaggatgagtctgagtattctggataccccggtttca
tatctggatggcgctaaagataaatatgaaaaagcattgtctgatcataccaaattcgga
atgtatgaaacacataaatctcatattgaccatgagatttttgagcgggacacatttaat
ttaattccggttttgagaagattaaaagcgaaagcgattaaacaaatgggaacatccgga
ggaggaaatcactttgtggaattcggagaagtagaaattaccgaagaagatgaacaaata
ggacttcctaagggaaaataccttgggattctttctcatagcggatcaagaggtctgggt
gccgagattgcacagtattattccagagtggcagcagagcaatgtccgttgccaaaagaa
gcaaaacaatttgcatggctggatctgaatactcatctcggtctggaatactggacagct
atgaatcttgcgggcgattatgcagcagcttgtcatgatgatatccaccgaagacttata
aaagcagtgggaggccggataaaagcaagaattgagaaccatcacaattttgcatggaaa
gagattcataatagaaaagaggttattgttcacagaaaaggggcaacaccggctaatgaa
aatgaactggggatgattccgggatcaatgacggccaaaggatttattgtacggggtaaa
ggaaaccctgattcattaacatccgcgtcacacggtgcgggaaggctttattccagaggg
gaatgcagaagcctttttacacaaagtgatattaaaaatgagctgaaacttaaaaaggtc
atattaatgggaggaaatgcggaagaggcacctatggcttacaaggatattaacgaggtg
atgaatgcgcaaagcgaactggtggatatccttgggactttccaaccgagaattgtaaga
atggataaataa
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