Elusimicrobium minutum: Emin_0162
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Entry
Emin_0162 CDS
T00741
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
emi
Elusimicrobium minutum
Pathway
emi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
emi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Emin_0162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emi03400
]
Emin_0162
Enzymes [BR:
emi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Emin_0162
DNA repair and recombination proteins [BR:
emi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Emin_0162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
SNF2-rel_dom
Cas3-like_C_2
SWI2_SNF2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ACC97727
UniProt:
B2KBP0
LinkDB
All DBs
Position
complement(174565..177699)
Genome browser
AA seq
1044 aa
AA seq
DB search
MTQKNNLAYFYGLPNFGAKARFVFDKFSSLDKNSVFVSNEEEDLDAFESALKTWSEGKIL
TEVYLSDDKGMLMHALYKILKSSAPLAITSTYQNLNIPLPGKKDFLSKLKNIKQTEVLKR
GDLIDYLHSCGYKREEFTENPGEFAVRGSVVDVFIHGQKLPARLYFAGNIVETISSFDVD
TQNTKEYKNEITVIPLHFEELPSNIKNWAGEAAFIFDNPASDFDATEYDNAVIISPIPHG
ENYALNANIKFNANMDLATKEINSLSLQGYDIAVFCLNRGEEDRLKELFNNHGILNKVSF
KIADITQGYYSVKDKKAYITSSEILDRNYHTSSLLKNFEIEGAKRVRFKDLVEGDYIVHQ
THGIGRYRGLETLDKDTAPTDALVIEYRKGSKLFVPVQDFGKVQKYIGVKGKTPPLSHLG
GVAWKEVKRRVKEAAQKDAEEILKMEALRSAANAKPLTGDAQLEAEFADSFPYIQTPDQS
QAISEILDDLTRQKTMDRVLVGDVGFGKTEVAMRAVMRTALSSKQVLVLVPTTILAAQHY
KTFVKRMASFPVSVEMLSRFQTKAEQKIIVEKIRKGTVDIVVGTHRLLSKDISFANLGLV
IIDEEHRFGVKQKEKIKAKTAGVHTLMLSATPIPRTLNQSLSSLRNLSLIETPPQGRMPV
KTIVTPWNNDLAANAVRQEIGRGGQVYFVYNRVQSMESRLELLKRLVPEARICMAHGQMN
ETALEKTLWAFYNHEYDILLASTIIESGLDISNANTLIIESAQDFGLAQLYQLRGRIGRG
DRKAYCYLFHPDWLFQKPKDNIERENNFEDLKAFLTKKKEADPTETAKKRLSALMEFSEL
GSGFKLALRDMEIRGAGELLGTRQHGFANEVGLSLYCDMVAAEVKKLKGEPVEKKYRATV
NVPVAAYIPPEYLPDDNERLRYYKELLNSGELEQKKTLNKLIDLAGPLPEEVKTLSKVIL
ISNKAGELNIRHIEATKDFVEFYFAKNFKMPEGAIGELIVKYGNNLKFIPSAKGDGFRIN
LTRGGANYFNEIENTLNFFNLKIK
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgacgcaaaaaaacaaccttgcctatttttacggcctgcccaactttggagcaaaggca
aggtttgtttttgacaaattttcaagtttggataaaaattccgtctttgtttctaacgaa
gaagaggatttggacgcgtttgaatccgcgctaaaaacatggtcagaaggcaaaatttta
acagaagtatacctttcagatgacaaaggcatgttaatgcatgctttatacaaaatatta
aaatcttccgcgcctttagccataaccagcacttaccaaaatttaaatataccgttgccg
ggtaaaaaagatttcttatcaaaactaaaaaacataaaacaaactgaagttttaaaacgc
ggcgaccttatagattatttgcattcctgcggctataaacgcgaagagtttaccgaaaac
cccggtgagtttgctgtgcgcggcagcgtggttgatgtttttatacacggacaaaaactg
ccggcgcgcttatacttcgcaggcaatattgttgaaactataagctcttttgacgtagat
acgcaaaacaccaaagaatataaaaatgaaattaccgttatacctcttcactttgaggaa
ctgccttcaaatataaagaactgggcgggagaggcagcttttatttttgataatcccgct
tcggattttgacgctaccgaatatgataacgccgtaataatttcccccattccccacggc
gaaaattacgctttaaatgccaatataaaatttaacgcgaacatggaccttgccactaaa
gaaataaattctttatctctgcaaggctatgatatagcagttttttgtttaaacagaggt
gaagaggacaggcttaaagaactttttaataaccacggtattttaaataaagtttctttt
aaaatagcggacatcacgcaaggttattacagcgtaaaagacaaaaaggcttacataacc
tcttctgaaattttagacaggaattaccacacaagctctttgcttaaaaactttgaaatc
gaaggcgctaaaagagtgcgttttaaagatttggttgaaggcgactatattgtgcaccaa
acccacggcataggccggtacagagggcttgaaacgcttgataaagacactgcgccgaca
gacgctcttgtaatagaataccgcaaaggaagcaagctttttgtacccgtgcaggatttt
ggcaaagtgcaaaaatatataggcgtaaagggcaaaacgccgccgttatcgcacttaggc
ggagtggcgtggaaagaagttaaaagacgagttaaagaagctgcccaaaaagacgctgag
gaaattttaaaaatggaagccttaagaagcgcggccaacgccaaacctttaacaggtgac
gcccagcttgaggccgagtttgccgattccttcccctacattcaaacgcctgatcaaagc
caggccataagcgaaattttagacgatttaaccagacaaaaaaccatggaccgcgtttta
gtgggcgacgtaggattcggcaaaacggaagtcgccatgagggcggttatgcgcaccgct
ttaagttcaaaacaagttttggttttggtacctacaacaattttggccgcgcagcattac
aagacttttgttaagcgtatggcctcatttcccgtatctgttgaaatgttaagcaggttt
caaactaaggcggagcaaaaaattattgttgaaaaaataagaaaaggcaccgtagatatt
gtggtgggtacgcacagacttctttctaaagatatttctttcgctaatctaggacttgtt
atcatagatgaagagcaccgctttggcgtcaaacagaaggaaaaaattaaagcaaaaaca
gctggcgtacatacgcttatgctttccgccacaccgataccgcgcactttaaaccagtcg
ctttcatctcttaggaatttatctcttattgaaacccccccgcaaggtcgtatgcccgta
aaaacaattgtaacgccttggaataatgatttggccgccaacgccgtaaggcaggaaata
ggccgcggaggacaagtgtattttgtttataacagagtgcaaagtatggaaagcaggctt
gagcttttaaaacgcctagtgcctgaagcccgcatttgtatggcgcacgggcaaatgaat
gaaactgcattagaaaaaaccctatgggctttttataatcatgaatatgatattttgtta
gcttccacaattatagaatccggcctggatatcagtaacgcaaacactttaataatagag
tccgcacaggatttcggccttgcgcaattataccaactacgcggcagaataggccgcggt
gacaggaaagcctattgctatttatttcaccctgactggctgttccaaaaaccgaaagac
aatattgaacgtgaaaataattttgaggatttaaaagcttttttaacaaaaaagaaagaa
gccgaccctaccgaaactgcaaaaaaacgcctttccgcccttatggaatttagtgaactc
ggcagcggttttaaacttgcactgcgcgatatggaaataaggggcgcgggagagcttttg
ggcaccaggcagcacggttttgccaatgaagtaggtttaagtttatattgtgatatggtt
gcggcagaagtgaaaaaattaaaaggtgagcctgttgaaaaaaaataccgcgctactgta
aacgtacctgtagccgcttatataccgcctgagtatctgcctgatgacaatgaacgctta
cggtattataaggagcttttaaacagcggcgagctggaacagaagaaaactttaaataaa
cttatcgacttagcgggtccgctgcctgaggaagttaaaacgctttctaaagttatttta
atttcaaacaaagccggcgagcttaatataagacatattgaggctaccaaagattttgtg
gaattttattttgctaaaaactttaaaatgcctgaaggcgcgataggcgaacttatagtg
aaatacggcaataaccttaaatttataccatccgccaaaggcgacgggtttagaataaat
ttaacgcgcggcggcgccaattattttaatgaaattgaaaacactctaaacttttttaat
ttaaaaataaaataa
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