Elusimicrobium minutum: Emin_0499
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Entry
Emin_0499 CDS
T00741
Name
(GenBank) Transcription termination factor
KO
K03628
transcription termination factor Rho
Organism
emi
Elusimicrobium minutum
Pathway
emi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Emin_0499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emi03021
]
Emin_0499
03019 Messenger RNA biogenesis [BR:
emi03019
]
Emin_0499
Transcription machinery [BR:
emi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
Emin_0499
Messenger RNA biogenesis [BR:
emi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Emin_0499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA
AAA_25
WEF-hand
NACHT
S1CSD-TOTE-2
Spore_III_AA
ResIII
DUF5667
AAA_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACC98055
UniProt:
B2KCD4
LinkDB
All DBs
Position
547015..548508
Genome browser
AA seq
497 aa
AA seq
DB search
MTEKSLEENKEKVTTKEVSKEVKEIKDVKESKEAKEVKEPKETKEVKDASASKTQQRPFT
RNGNGYQQQQVRTPNGAKVMDARELGKLSVAELTKLAVNLNIEETSGLKKQALIGKIIAV
QAKQNGSIYGGGVLEILPDGFGFLRSEDNNYLAGPEDIYVSPSQIKRFGLRKGDTIEGLI
RPPKDGERFFAMLQVQKVNDIEVEKIYNRPLFDNLTPLHPNKRFTLELDKNDITQRIIDL
MAPIGRGQRALIVAPPKTGKTMMMQSIANSITNNYKEVKLIVLLIDERPEEVTDMSRSVK
GEVIASTFDEAPDRHVQVAEMALERAKRLVEQGTDVVILLDSITRLARAYNTVTPSSGRV
LTGGLEATSLQRPKRFLGAARNMEEGGSLTIIATALVETGSRMDEVIFEEFKGTGNSEIC
LDRKLSDRRLFPAIDLNRSSTRKEDLLLSEDELNKVWIIRKVLAPLTSVDAMTLLRDKIV
ASKSNKDFLKQMEVSSL
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgacagaaaaaagtcttgaagaaaataaagaaaaagttacgactaaagaagtctccaaa
gaagttaaagaaataaaagatgtaaaggaaagcaaagaggctaaagaagtcaaagaacct
aaggaaacaaaagaggttaaagacgcttccgcgtccaaaacacagcagcgtccttttact
cgcaacggcaacggttaccagcaacaacaggtgcgcacgcctaacggcgcaaaagttatg
gacgcgcgtgaattaggcaaattaagcgtggctgaacttactaaacttgcggtcaactta
aatattgaagaaacttcaggcttaaaaaaacaggctttaataggcaaaattatagcagtg
caagctaaacaaaacggttctatttacggcggcggcgttttggaaattttgcccgacggt
ttcggctttctccgctccgaggataataattacttagccgggccggaagatatttatgtt
tcgccttcgcaaattaaacgttttggtttaagaaagggcgatactattgaaggccttatc
cgcccgccaaaagacggtgaaagattttttgccatgttgcaggtgcaaaaagttaatgac
atagaggttgaaaaaatttataacaggcctttgtttgacaacttaacgccgctgcatcct
aataaacgctttactcttgaattagataaaaacgatataacccagcgtattattgacctt
atggcccccataggccgcgggcagagggctcttatagtggcgcctccaaaaaccggtaaa
actatgatgatgcaaagcatagcaaactcaataacaaacaattataaagaagtaaaactt
atagttttgttaattgacgaaaggcccgaagaagttaccgacatgagccgcagcgttaag
ggcgaggttattgccagcacttttgacgaagccccggacagacacgtacaagtggccgaa
atggctttggaaagagcaaaaagacttgttgagcaaggcacagacgttgtgattttgctt
gactctattacacgtcttgctcgcgcttacaacacggttacgccttcaagcggacgtgtt
cttaccggcggtttggaagcgacctccttacagcgccctaaaagatttttaggcgcggca
agaaatatggaagagggcggttctcttacaattatagctacggctcttgttgaaacgggc
agcagaatggacgaagttattttcgaagaatttaaaggcacgggcaacagtgaaatatgt
ttggacagaaaactttccgacagacgtcttttccccgctattgatttaaacagaagttca
accagaaaggaggatttgcttctttccgaagatgaacttaacaaagtgtggattatacgc
aaagttcttgctcctttaacctcagttgacgccatgacgcttcttagagataaaattgtg
gccagtaagtctaataaggactttttaaaacaaatggaagtttcaagcttataa
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