Emergencia sp. JLR.KK010: V1225_00785
Help
Entry
V1225_00785 CDS
T10584
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
emj Emergencia sp. JLR.KK010
Pathway
emj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
emj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
V1225_00785 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emj03021
]
V1225_00785 (rpoB)
03400 DNA repair and recombination proteins [BR:
emj03400
]
V1225_00785 (rpoB)
Enzymes [BR:
emj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
V1225_00785 (rpoB)
Transcription machinery [BR:
emj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
V1225_00785 (rpoB)
DNA repair and recombination proteins [BR:
emj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
V1225_00785 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
DUF5887
Motif
Other DBs
NCBI-ProteinID:
WWR23966
LinkDB
All DBs
Position
complement(181637..185302)
Genome browser
AA seq
1221 aa
AA seq
DB search
MPKPIKVGRKDRMTFSKINEVGQMPNLIDIQTSSYDAFIKEGLREVFEDISPIRDYADNL
ILEFIDYSLNDPPKYEQEECKERDVTYAAPLKVRVRLVNKETGEVKEQEVFMGDFPLMTE
KGTFIYNGAERVIVTQLVRSPGPYYGVETDKSNNKLYSTQIIPNRGAWLEYETDSNEIIS
VRVDRTRKQPLTTLLRALGISSDREIIDIFGEDSRLLKTLEKDTTNDYESGLKEIYRRLR
PGEPPTVDSARSLLNSLFFDPKRYDLAKVGRYKYNKKLGLSNRLPDVVVAEDVIDPNTGE
ILAEAGQKISRALAKDIENAGVEYVMARGKDDETQITKVIGSRFVELSQYVDFDTTDLKV
ADQVYYPVLMEILEQCQDEDEIKQMLVTRKNDLSPKHIIMEDIIASVSYILNLNYGIGST
DDIDHLGNRRLRTVGELLQNQFRIGLARMERVVKERMTIQDIEVTTPQALMNIRPVTAAI
KEFFGSSQLSQFMDQNNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIE
TPEGPNIGLIGSLTTYGIVDEYGFIETPYRVVDKETGVVTEEIRYITADEEELLIIAQAN
EPLDEEGHFVNAKVAARGVGGEIAMFAREVVDMMDVSPKQVVSVATAMIPFLENDDANRA
LMGSNMQRQAVPLLVTEAPFVGTGMEYKAARDSGVVILAKNAGTVEFVDADKIRIRRDDN
NELDEYKLLKFKRSNQGTCINQRPIVSHGEHIEAGEVIADGPSTDLGEIALGKNLLIGFM
TWEGYNYEDAIILNERLLMNDVLTSLHIVEYEAEARDTKLGPEEITRDIPNVGDEALKDL
DEEGIIRIGAEVDSTDILVGKVTPKGENDLSAEERLLRAIFGEKAREVRDTSLRVPHGET
GIVVDVKIFTRENGDELPPGVNKLVRCYIATKRKINVGDKMAGRHGNKGVISRILPEEDM
PFKEDGEPLQVMLNPLGVPSRMNVGQVLEVHLGLAAKTKGWYIATPVFDGATEKDIRELL
EDCGFSETGKLRLRDGRTGEWFDNPVTVGYMYMLKLHHLVDDKIHARSTGPYSLVTQQPL
GGKAQFGGQRFGEMEVWALEAYGAAHTLQEILTVKSDDIVGRVQTYEAIVKGENIPEPGI
PESFKVLIKEMQSLALDVRVLTEDNEEIQIKEVSEYDDVSGIDGIMDVDTELESEEKLFA
EGFTEETPDDDMTESFADDEL
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacctatcaaagtaggtagaaaagaccgtatgacattctcaaaaatcaatgaa
gttggccagatgccaaatctcattgacatccagaccagttcatatgatgcttttatcaaa
gaaggtctgagagaagtttttgaggacatctccccgattagagattatgcggataatctg
attttagaattcattgattactccctgaacgatcctccgaagtatgaacaggaggagtgt
aaggagagagatgtaacatacgcagctccgctgaaagtcagagtaagactcgtaaacaaa
gaaactggagaagtaaaggaacaggaagtgttcatgggagatttccctctgatgacagaa
aagggaactttcatttacaatggcgctgaacgtgtcatcgtaacacagctggttcgttcc
ccgggaccttactacggtgtcgaaactgacaaatctaataataaactttattccacccag
attattcctaacagaggtgcatggttggaatacgagacagactccaacgaaattatttcc
gttcgagttgacagaaccagaaagcagccgctgactacgctgcttcgtgcactgggtatc
agctccgacagagaaattattgatatcttcggtgaagacagcagactgctgaagacctta
gagaaagatacaaccaatgactacgaaagtggtctgaaggaaatttaccgcagactgaga
cctggcgagcctcctacagtggacagcgctagatccctgctgaattccctattctttgat
ccaaagagatatgacctagctaaagtaggaagatataaatataacaagaagttagggctg
tcaaacagactgcctgatgttgtcgttgctgaggacgttatcgatccgaacactggagaa
atcctggcggaagctggtcagaagatcagccgcgctcttgcaaaggacatcgaaaatgcc
ggtgttgaatatgtaatggcacgtggaaaagatgatgaaacacagattacaaaagtaatc
ggcagcagatttgtcgagctgtctcagtatgtagattttgacacgacagatctgaaagtg
gcagatcaggtatattatcctgtactgatggaaattttggaacagtgccaggatgaggat
gagattaaacagatgctggtgacaagaaagaatgacctttctccaaagcatattattatg
gaagacatcattgcatctgtcagctatattctaaacctgaattatggcattggaagcact
gatgatatcgaccatctgggcaacagaagactgagaactgtaggagaactgctccagaat
cagttccgtatcggtcttgccagaatggaacgtgtggttaaggaaagaatgaccattcag
gacattgaggtaacaacgccgcaggcgctgatgaatattagacctgttacggctgcaatc
aaggaatttttcggaagttctcagctgtcccagttcatggaccagaacaatccgctggca
gagctgactcacaagagaagactttccgcattgggacctggcggtctttccagggaaaga
gccggattcgaagtgcgtgacgtacaccactctcactatggaagaatgtgtccgattgag
acgccagaaggtccgaatatcggtctgatcggttccttgacgacctatggtatcgtagat
gaatatggattcattgagactccatatagagtagtagataaagaaaccggtgtggttaca
gaagaaatccgttatatcactgcagacgaagaagaactgctgattatcgcccaggcaaat
gagccgctggatgaagagggacactttgtcaatgcaaaggttgctgccagaggtgtcggc
ggcgaaatcgctatgttcgcaagagaagttgtagacatgatggacgtatctccgaagcag
gtagtatccgttgcaactgcaatgattccgttcctggaaaacgacgacgccaaccgtgcc
ctgatgggttccaacatgcagcgtcaggcagtgcctcttctggtaacagaagcgccgttt
gtaggaactggtatggaatacaaggcagccagagattccggtgttgtaatcctcgctaag
aatgcaggtactgttgagtttgttgacgctgacaaaatccgtatcagaagagatgacaac
aacgaattagatgaatataaattattgaagttcaagcgttccaatcagggaacctgtatt
aaccagagaccgattgtatctcacggtgaacacattgaagccggcgaagtaatcgctgac
ggtccttccacagaccttggagaaattgcactgggcaagaacctgctcatcggcttcatg
acctgggaaggctataactacgaggacgcaatcattctgaacgaaagacttctgatgaat
gatgtgctgacttccctgcatatcgtggaatacgaagcagaagcaagagacaccaaactg
ggacctgaagaaatcaccagagatattcctaacgtcggcgatgaggcgctgaaggatctg
gatgaagagggtatcatcagaatcggtgcagaggttgactccacagatattctggtcggt
aaggtaacgccaaagggcgagaacgacctttccgcagaggaaagactgctgcgcgccatc
ttcggtgagaaggcaagagaagtcagagatacttccctgcgcgtgcctcacggtgaaact
ggtatcgtagtagacgtaaaaatcttcacaagagaaaatggcgacgaactgccgccaggt
gtcaataaattagtaagatgctatatcgcaactaagagaaaaatcaatgtaggcgataag
atggcaggtcgtcacggtaacaagggtgtaatttcccgtatcctaccggaagaggatatg
ccatttaaggaagacggcgagccgctgcaggttatgctgaaccctctgggtgtaccttcc
cgtatgaacgttggtcaggtgttggaagtgcatctgggtcttgcagcaaagactaagggc
tggtatattgcaacaccagtatttgacggtgcgaccgaaaaagatatccgtgagcttctt
gaggactgtggtttctcagagacaggtaaactgagactgagagatggcagaaccggtgag
tggtttgacaatcctgtaaccgtaggttacatgtatatgctcaagcttcaccatttggta
gacgataagattcacgcaagaagtactggtccgtactctctggtaacgcagcagcctctg
ggtggtaaagcacagttcggcggacagcgttttggagagatggaagtttgggcgctggaa
gcatacggcgcagcacacacactgcaggaaatcctcaccgtaaaatccgatgatatcgta
ggtcgtgtacagacttatgaagcaattgtcaaaggtgaaaatattccggaaccgggtatt
cctgagtccttcaaggttctcatcaaggaaatgcagtcactggcactggatgtaagagtg
cttactgaggacaacgaagaaattcagataaaggaagtatccgaatatgatgacgtttcc
ggtatcgacggcattatggacgtagatacggaactggaaagtgaagaaaaattgtttgca
gagggattcacagaagagacccccgacgacgatatgactgagagctttgcagatgatgag
ttataa
DBGET
integrated database retrieval system
