Emergencia sp. JLR.KK010: V1225_03000
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Entry
V1225_03000 CDS
T10584
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
emj Emergencia sp. JLR.KK010
Brite
KEGG Orthology (KO) [BR:
emj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emj03400
]
V1225_03000
Enzymes [BR:
emj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V1225_03000
DNA repair and recombination proteins [BR:
emj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
V1225_03000
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
Cas_Cas4
DUF6576
Motif
Other DBs
NCBI-ProteinID:
WWR24392
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All DBs
Position
619962..623285
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AA seq
1107 aa
AA seq
DB search
MLQIFYGRESIEKEKFIYEDIQKNPGRTIVIVPDQYTLEAEKQAFLFLHAESMMDVEIIG
MSRLGSRLLSQQGGGSKTFIDKYGRHMLLTQIAGKCEDKLQVFKGSLRKPAFIEMTNNFI
SEMKQYNVNPQDLTELSQALSEESVLRAKLADLVLIFSEYQKKIKDRYTDSEDYIDLYMS
KIRSSAWISESRIWVYGFDSFAPKALDVLGNLIATAKEVSVFLTCDKGCRDEELFLLPEI
VMRNLRKQAEAYDMECRMQQIAEGTGFDAVRNPAISHIEKEFYAVGQRTGDFPLLKEQDA
PIVLVQAANMYSEAESAASYILHLIRDKGFRYRDIVVICNDQTVRGSIIGRVFEEWDLPV
FDDKKRSVLSSPIAIFAVGLLETVVYNYRSSDIFKVLKTGFSSLSDEEIERLENYSIQYR
IKGNMWLAPFVKGQMEYGDDGLEELNAIREKAMELFAGLKMICDETVSMGDFVCRYYDFL
IEDCGLGVRIAELLRVQEEQGLFDLAEETAQIWGQMVGLLDQIAELAGEEQFRRKDFVEL
LIAGLSQLEIGVLPPTADDILMGTMQRTRSGQVKAVVIIGANEGLLPANASSEGLFSMEE
LEFFAEEGKEICKVEKIRVMEEQLAIYRNLSKASDYLWISYSASDGDGKESRPSEIIDTL
RRLFPNLTVQTDVVSSGDLDAVVGGRVNTLRHLTEALLSVRRGEKIDSRWKAVIHWYQCH
EPESLQRVSEGLSFTNAQKDISPELASLLYKKEMNLPMTLSPSRLEKFSRCPFSHFIAYG
LRPQERRIYEASSREIGDIYHRCLMEVSRKLTVEDRWDSISEDECRSFVSDIAKLEAANY
REGIFDFGNEERYKTRRIEDTCFHVCWALVEQVRAGNIKKSLYEVPFGRERSIAPIEVNL
GSSTVYIEGKIDRLDILEGDRVKIVDYKTGKETFNEKEARAGYRLQLMLYLKAAQEKVRR
PAGVFYFHIADQRVDLTGTEREKFFEKISKEMRKFFRLSGIMVDSGAVIEDIAGEFSGFS
DILPLRRNTAGEVSATSEGFLLSDEQFEQLQADVDVQIEKLCRQLSDGRIAIHPKKTEKQ
SPCTYCDYKGICRFDLSFPGCNYEVIK
NT seq
3324 nt
NT seq
+upstream
nt +downstream
nt
atgctgcaaatcttttacggaagagaaagtatcgaaaaggaaaagttcatctacgaggat
attcagaaaaatccaggcaggacgattgtcatcgtgccggatcagtacacgctggaagca
gagaagcaggctttcttgtttttgcatgcagaaagcatgatggacgtggagattatcggc
atgtcgcgccttggaagcagattgctttcgcagcaggggggcggcagcaaaacctttatc
gataaatacggcagacatatgctgctgacccagattgccggaaaatgcgaggacaagctg
caagtgtttaaaggcagtctcagaaaaccggcatttatcgagatgacgaataactttatt
tcggagatgaagcagtataacgtgaatccgcaggacttgacggaactaagccaggcgctt
tctgaagaaagcgttctgcgggcgaaacttgctgatcttgtgctgattttcagtgaatat
cagaagaaaattaaggatagatatactgactctgaggattatatcgacctgtatatgagt
aagattcgttcatctgcgtggatttccgagagcaggatttgggtatacggctttgacagt
tttgcgccgaaagccttggatgtgctgggaaatctcatagcaactgcaaaggaagtcagc
gtatttttgacctgcgacaagggctgcagagatgaagaactgtttctgctgccggaaatt
gtcatgaggaatttacggaaacaagcggaagcctatgatatggaatgcaggatgcagcag
attgctgaagggactggctttgatgcggtgagaaatccagccatctcccatattgaaaaa
gagttttatgcggtggggcagcgaaccggcgattttcctttactgaaggagcaagatgcg
ccgatcgttttggtgcaggctgccaatatgtatagcgaggcagagtcagcagcgtcttat
attttgcatttaatcagggacaagggatttcgctatcgggatatcgtagtgatttgcaat
gatcagaccgtgcgtggctctattataggaagagtttttgaagaatgggatttacctgtt
tttgatgacaaaaagcggtctgtcttgagttcgcctattgcaatttttgcggtgggactg
ttggaaacggtagtgtataactatcggagcagcgatattttcaaagtgctgaaaactggg
ttttccagtctttctgatgaagaaattgagcgccttgagaactactccattcagtacagg
atcaaggggaacatgtggctggcgccttttgttaaggggcagatggagtacggagatgac
ggtcttgaggaacttaacgccataagagaaaaggcgatggagctgtttgccgggcttaaa
atgatttgcgatgagacggtatctatgggcgattttgtctgccgatactatgattttttg
atagaggactgcgggctaggcgtgcggattgcggagttgcttcgcgtacaggaggagcag
ggtctttttgatctggcggaggagactgcacagatttgggggcagatggttggacttttg
gatcagattgcagagcttgccggggaagagcagtttagacggaaggatttcgtagagctc
ttgattgccggactgtctcagcttgaaattggcgtgttgccgccgactgcggacgatatt
ctcatgggaaccatgcagagaaccagaagcggtcaggtgaaagcggtggttatcatcggc
gctaacgaaggtctgcttcctgcaaatgcttcttctgaggggcttttcagtatggaagaa
ctggaatttttcgcagaggaaggaaaagaaatctgtaaagtagaaaaaattcgtgtcatg
gaagaacagctggcgatttacaggaacctgtcaaaggcgtcggattacctgtggattagc
tattctgccagcgacggagacggcaaggaaagtcgcccgtctgaaatcatcgatacactg
cgcaggctgtttccaaatctcaccgtgcagacagatgtagtcagcagcggcgatctcgat
gcagtagtaggtggcagggtcaataccttgcgccatttgacggaagcgctgctttctgta
aggcggggggaaaagatcgacagcaggtggaaggctgtcatacattggtaccagtgtcat
gaaccggaaagcctgcagcgggtttccgaggggctgtcctttaccaatgcgcagaaggat
atttcgccagaactggcgtcgctgctgtataaaaaggaaatgaatttgccgatgactctg
agcccgtccagactggagaagttcagtcgttgtcccttttcccattttattgcatatggg
ctgagaccgcaggagcggcggatttatgaggcatcgagtagagaaatcggggatatttac
catcggtgtttaatggaagtttcacgaaagctgacggtagaggatcgatgggacagtatt
tcggaggatgaatgccgcagttttgtcagcgatattgcaaagctggaagctgcaaattac
cgggaaggaatttttgatttcggcaatgaagaacgttacaagaccaggcgtattgaggat
acatgctttcatgtctgctgggcgcttgtggagcaggtgcgggcaggaaatatcaagaaa
agtctttacgaggtgccttttggaagagaacgcagtatagcgcctattgaagtgaatcta
gggagcagtacggtttatatcgaaggcaaaattgacagattggatattttagaaggcgac
cgggttaaaattgtagattacaagaccggtaaggaaaccttcaacgaaaaggaagccaga
gccggataccgtttgcagcttatgctgtatctcaaagcggcgcaggaaaaggtgcgaagg
cctgccggagtattctattttcatattgcagaccagcgagtggacttgacgggaacagag
cgggaaaaattttttgaaaaaatttcaaaagaaatgaggaaatttttccgattaagtggt
ataatggtagatagtggtgcggttatcgaagatatcgctggcgagttcagcggattttcg
gatattctgcctctgcgaagaaacactgctggtgaggtttccgcaacttctgaggggttt
cttctcagtgatgaacaatttgagcagctacaggcagatgtagatgtacagattgagaag
ctgtgcagacagctttctgatggcagaatcgccatccacccgaagaagacggagaaacag
tccccttgtacttactgtgactataagggtatctgcaggtttgacctgagttttccgggt
tgtaattacgaggtcattaaataa
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