Emergencia sp. JLR.KK010: V1225_08115
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Entry
V1225_08115 CDS
T10584
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
emj Emergencia sp. JLR.KK010
Pathway
emj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
emj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
V1225_08115 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emj03400
]
V1225_08115 (mfd)
Enzymes [BR:
emj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
V1225_08115 (mfd)
DNA repair and recombination proteins [BR:
emj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
V1225_08115 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WWR22592
LinkDB
All DBs
Position
1691351..1694791
Genome browser
AA seq
1146 aa
AA seq
DB search
MNNKGIINISGISESRCAPVISHILKEEGQSLIVTASSARAGRLASDLSFFSEREILVLP
AEDQVFLRYEAKNHDQLIERLKILKALRTKEDCIVIAPVSAAVKKITPHKNFESSSMKIS
LGDDLDLGKVKESLVKLGYERMELVDTKGQFSLRGGILDIFTPDSELPYRIELFDTEVDS
IRNFDIETQRSVENLQFVEIYPAEHMLADKGIFEEAAKLLHREYTAQAKRLLKKGDDFEE
AATHLEKRRDELCEYITNVSNLQLLENYLHYFYEETEYLWDYMEGGTIIIDDPDRICEYL
DARSTETKDDFKIFLERGQVIPKDMELLSGREDFYKIYQKESVYVLTPFAKAIKGVEHFT
AVHSVQSRQMVEFGGRMELLEAELKNYAKKQYKIVIAASSKERIGNLREFAQRIGLDEKI
IFAEGTLSAGMDFPEEKICYISENDIFSGQNLQRKKRKKKKTKSEQIKSFADMRSGDFVV
HENHGIGKFLGLEQLTVQGEQKDYLKIKYAGNDMLYVPVEQMDMIQKYIGSDGASPKINK
LSGGEWKATKAKAKAAIAEMAQELLKLYAQRKMQKGHAFCEDTVWQKEFEEAFPYTETDD
QLRSIEEIKEDMERPQAMDRLLCGDVGFGKTEVAARALFKCIADGKQAAVLVPTTILANQ
HYYTLKERFEQFPLKVEMLSRFRSEKQQEQIIDALGRGQVDLVIGTHRLLSSDVKFKDLG
LLVVDEEQRFGVAHKEKIKQIKQNIDVLTLSATPIPRTLNMSLTGIKDMSVIEEPPEERY
PVQTYVLEQEDFMIREIITRELDRGGQVFVVYNRVRGINKLADNIRSLVPEARVCVGHGQ
MNEHALEDVMLSFINGEHNVMVATTIIESGIDISNANTMIIIDADKYGLSQLYQLRGRVG
RSNRMAYAYLMYQKDKVLTEIAEKRLKAIKEFTEFGAGFKVAMRDLEIRGAGNLLGSEQS
GHMMNIGYELYCKLVDDAIRALQGEVVNDNQEEISVELAVTANIPTWYIENETLKLQMYK
KIATVRNESDEDEIIDEMMDRFGDVPRETLNLIRISRIRSMAENLAVSRIYEQQGKVIVA
FGEKNPLNGYALMNVSEAFGMRTFVHGGVEPYIRLTVKPTEKLKDTVKLLQILQEQKSVK
PAGVKA
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaataataagggaatcattaatatttcaggaatctctgaaagcagatgtgcacctgtt
atttcccatatactgaaagaagaaggacagagtctgattgtcacagccagcagcgcccgt
gcagggaggctggcatcagacctttcttttttttcggaaagggaaattttggtgctgcct
gcggaagatcaggtattcttgcgctacgaggccaagaatcacgaccaactgatagaacga
ctcaagattttaaaggcgcttaggacaaaggaagattgcattgtcatagcgcctgtttct
gctgccgtaaaaaagatcacacctcacaaaaattttgaatcttcttccatgaagatttct
ttgggtgacgatcttgatttgggcaaggtaaaagaatctctggtgaagctgggctatgaa
cgtatggaactggtggatacaaaagggcagttttccttaagaggcggtattttagatatc
tttacgccggacagcgaactgccgtacagaattgagctatttgatacggaagtggactcc
attcgtaattttgatattgagactcagcgctctgtagaaaatctccagtttgtggaaatc
tatccggctgagcatatgctggcggataaagggatttttgaagaggcagcaaagcttttg
catagggaatatacggcgcaggcaaagcggcttttgaaaaagggagatgactttgaagag
gcggcgacccacctggaaaagcgcagagatgagctttgtgaatatattaccaatgtgtct
aatctgcagcttctggaaaactatcttcactatttctacgaagaaacggaatacctttgg
gactatatggaaggcggcacgattatcatagatgatcccgacagaatttgtgaatatttg
gatgccagaagcacggaaacgaaagatgattttaaaattttcctcgagcgggggcaggtg
attccaaaggacatggaactgctttccggcagggaagacttttataaaatttaccaaaaa
gaaagtgtttatgtgttgaccccattcgctaaggcaatcaagggtgtggagcactttacg
gctgttcacagtgtgcagagcaggcagatggtggagttcggcggcagaatggagcttttg
gaagcagagctaaagaattatgcgaagaagcagtataaaatcgtcattgcagcatcctcc
aaagagagaataggcaacctgcgggaatttgcgcagcgaatcggactcgacgaaaaaatc
atctttgctgagggaactctcagcgccggaatggattttccggaggaaaagatttgttat
atcagtgaaaatgatatcttctccggtcaaaatctgcagcgaaagaagcgaaaaaagaaa
aagactaaatcggaacagattaagtcctttgcagacatgaggagcggtgattttgtggtt
cacgaaaatcacggaatcggtaaattcctgggtcttgagcaactgactgtgcagggagag
caaaaggactacctgaagatcaaatatgccggaaacgacatgctttacgtgcctgttgag
cagatggatatgattcagaaatacattggctctgatggtgcgtcgcctaagataaataag
ctgtccggcggcgagtggaaggcaacgaaggcaaaggcaaaagccgccatcgctgaaatg
gcacaggagcttctaaagctttacgcgcagcggaaaatgcagaaaggtcatgctttctgt
gaggatacagtttggcagaaggagtttgaggaggcatttccatatacggaaacggacgac
cagcttcgttccatcgaggaaatcaaagaggatatggagcggccgcaggccatggataga
cttctctgcggtgatgtaggctttggaaagacagaggttgcagcaagagctttgtttaag
tgcattgcagatggcaagcaggcggcagtactggtgcctaccaccattttggcaaatcag
cattattacacgctaaaagagcgttttgaacagtttccactcaaagtagagatgttatct
cgcttccgctcggaaaagcagcaggagcagattattgacgcccttggaagggggcaggtg
gaccttgttattggcacccacagacttctttccagtgatgtgaagtttaaggatttaggg
cttttggtcgttgatgaagagcagcgtttcggagtggcacataaagagaaaatcaagcag
ataaagcagaacattgatgttttgactctttctgcaacgccgattccaaggacgctcaac
atgtcgctgacgggcattaaagacatgagtgtcattgaggagccgccggaagagcgatac
ccggtacagacttatgtgcttgagcaggaagatttcatgattcgtgaaatcatcacgagg
gaacttgatcgaggcgggcaggtctttgtggtgtacaacagggtgcggggcattaacaaa
ctagcggacaatatcagaagcctggtgccggaggcaagagtctgcgtaggtcatggtcag
atgaatgaacatgccttagaggatgttatgctgagctttatcaacggcgaacacaatgtt
atggtggcgacgactattattgagtcgggaatcgacatttccaacgctaacaccatgatt
atcatagacgcggacaaatacggactttctcagctttatcagctgcgaggacgcgtaggc
agatccaaccgcatggcatatgcttatctgatgtatcaaaaggacaaagttttgacggag
attgcggaaaaaaggctgaaagctatcaaggaatttacggaatttggcgcaggctttaaa
gtagctatgcgtgatcttgaaattcgcggcgcaggaaatcttcttggcagcgagcagagc
ggtcatatgatgaacattggctatgagctttactgcaagctggtagacgatgcaatccgc
gctttgcagggagaggtagtaaacgacaaccaggaagaaatttccgtggagcttgcggtt
actgccaatattccgacttggtatattgagaatgaaactctgaaattgcagatgtataaa
aaaattgccactgtcagaaatgaaagtgacgaagatgaaattatcgatgaaatgatggac
cgctttggcgatgtaccgcgggaaactttgaatctgattcgcatttccaggatccgcagc
atggcggagaatttggctgtctcccgaatctacgagcagcagggtaaggttatcgtggca
ttcggcgaaaagaatcctctaaacggctatgccctgatgaatgtgagtgaagccttcggt
atgagaacatttgtgcacggcggagtagagccttacatcagacttactgtaaaaccgaca
gaaaagctgaaggatacggttaagcttttgcagattttgcaggaacagaagagtgtaaag
cctgccggggtgaaagcttaa
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