Emergencia sp. JLR.KK010: V1225_08500
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Entry
V1225_08500 CDS
T10584
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
emj Emergencia sp. JLR.KK010
Pathway
emj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V1225_08500 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emj03019
]
V1225_08500 (rnr)
03016 Transfer RNA biogenesis [BR:
emj03016
]
V1225_08500 (rnr)
Enzymes [BR:
emj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
V1225_08500 (rnr)
Messenger RNA biogenesis [BR:
emj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
V1225_08500 (rnr)
Transfer RNA biogenesis [BR:
emj03016
]
Prokaryotic type
tRNA degradation factors
V1225_08500 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
CSD
S1CSD-TOTE-2
RNase_II_C_S1
Rho_RNA_bind
OB_RNR_1st
SBDS_N
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
WWR22666
LinkDB
All DBs
Position
1773368..1775326
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AA seq
652 aa
AA seq
DB search
MRKRRKKQFYTPGTEKLTGVLEKTKSGFGFVRQEEGGDIFVGRSNMYGAMHGDTVSVDLL
PEQFRTRSREGIVDKILERGNTEVVGTFQKNKRFGFVVSDDKRNNDDVFVKKSDFRGAQN
GDKVVAKITKYPEKNVSAEGKITEIISRFGETGGEIKALIRASGLYETFPSRVNAEAKAK
SREEITAEEIRRRRDLRDKTIITIDGASAKDLDDGVSIEITDGGNYLLGVHIADVSHYVA
ADGHLDREALKRGNSVYLLSRVVPMLPKVLSNGICSLNQGEDRLTLTCQMEIDESGSVVH
YEIFESIICSKARMVYDDVSDILEHEDEALIKKYEDIYDDLLAMGSLAEILRKKRKEKGS
LDFDFDEAEIELDEEEVPVAIGISERRTANRLIEEFMLAANQTVAEHFYWMEYPFVYRVH
EKPDTDKIVELKAFLAGFGINLPGNPDNIHPKALNDILQKVEGMPYENIVSTVMLRSMKK
AFYSTDCQGHFGLSFPYYCHFTSPIRRYPDLCIHRIIKDSICGRADEQKLKKYKADAQAA
AEIASLTERKAQSLEREVAKMKKAQYMQQYIGESFEGVISGVTNFGIYVQLPNTVEGMVR
LDSLRDDYYDYEPGKYRVIGRLSHNIYALGDRVTIEVLAANPEERQIDFLIV
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaagaagaaagaaacagttttatacaccggggactgagaaactgaccggtgta
ctggaaaaaacaaaatcgggatttggatttgtccgtcaggaagagggcggagatattttt
gttggcagaagcaatatgtacggcgccatgcacggcgatactgtttctgttgatttgctg
ccggaacagtttagaaccagaagcagagaaggcattgtagacaaaattttagagagaggc
aatacagaagttgtaggaacttttcaaaagaataagcgatttggattcgtggtttctgat
gataagagaaataatgatgatgtttttgtaaagaaatcggattttcgaggtgcacagaat
ggagataaggtagttgcaaagattactaagtatcctgagaaaaatgtcagtgcagaagga
aaaatcactgagattatttcacgctttggagagacaggcggcgaaatcaaagcgctgatt
cgagcaagcggtctctatgagacttttccaagcagggtcaatgcagaggcaaaggcaaag
tccagggaggagattactgcagaggaaattagaagaagacgggatctgcgggataaaacg
attattaccatagacggtgcgtcggcaaaggatttggacgatggtgtttctatagagatc
actgacggcggcaattatcttttaggcgtccatatcgctgatgtcagtcactacgtggcg
gcggacggtcatcttgatcgggaggcattaaaacggggcaacagtgtgtaccttttaagc
agagtagttcccatgctgcctaaggtgctttccaatggaatctgcagtctgaatcagggt
gaagataggctgaccctgacctgtcagatggaaattgatgagagcggcagcgtagtgcac
tatgagatatttgaaagcattatttgttccaaggcgagaatggtctacgatgatgtttcg
gatattttggagcatgaagatgaggcgttaattaaaaaatatgaggatatttacgacgac
cttcttgctatgggaagccttgcagaaattctcagaaagaagagaaaggaaaagggcagc
ttagattttgattttgatgaggcggaaatagaactggatgaagaggaagtgccggtggcc
atcgggatttccgagaggcgcactgccaacagactcattgaggagtttatgctggcggcc
aatcagactgtagcggagcatttttattggatggaatatcctttcgtctatcgtgttcac
gaaaaaccggacacagacaaaatcgtagagctgaaagctttccttgctggctttggaatt
aatctgccgggaaatccggacaacattcatccgaaggctctcaatgatattctacagaaa
gtggagggcatgccttacgaaaatatcgtcagcactgtcatgctgcgttctatgaaaaag
gcattttacagcaccgactgtcagggacattttggattgtcctttccgtattactgtcat
tttacttcaccgattcgaagatatccagatctttgtattcaccgaattattaaagactct
atttgcggcagggcagatgagcagaagctgaaaaaatataaggctgacgcgcaggctgcg
gcagaaattgcgtcactgactgagcgaaaagcgcagagtctggagcgagaagttgcaaag
atgaaaaaagcgcagtatatgcagcagtacatcggagaaagctttgaaggagtcattagc
ggcgtgactaattttggcatttatgtgcagttgcctaatacagtggagggtatggtgcgc
cttgacagtctgcgtgatgattattacgattacgagccgggaaaatatcgggttatcggc
agactcagtcacaatatttatgccctgggagaccgggttaccatagaggtgctggcggca
aacccggaagaaagacagattgattttctgatagtttaa
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