Emergencia sp. JLR.KK010: V1225_14055
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Entry
V1225_14055 CDS
T10584
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
emj Emergencia sp. JLR.KK010
Pathway
emj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
V1225_14055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emj03019
]
V1225_14055
03009 Ribosome biogenesis [BR:
emj03009
]
V1225_14055
Enzymes [BR:
emj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
V1225_14055
Messenger RNA biogenesis [BR:
emj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
V1225_14055
Ribosome biogenesis [BR:
emj03009
]
Prokaryotic type
rRNA helicases
V1225_14055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WWR23703
LinkDB
All DBs
Position
complement(2925017..2926573)
Genome browser
AA seq
518 aa
AA seq
DB search
MNYNESMIDKRILKGLDEMGFVEMTPIQEMAIPVLLEGKDIIGQAQTGTGKTAAFGIPMI
ENLRSKASGVQGLILCPTRELAIQASEELKKMAKHVPGVKIGAIYGGQDIEKQFRLLRGK
LSIVVGTPGRVMDHMRRGTLKLDALQMLVLDEADEMLNMGFREDIETICEAIPAERQTAL
FSATMPDEIMEITGKYQRNALHIHVPQEEMTIPLVKQTYYVVKGREKDTSLCRLLDYMSP
KRALIFCNTKRKVDQLTLILKGKGYSAEALHGDLSQHQRDRVMTLFRSGKLELLLATDVA
ARGIDVDDVDMVFNYDMPQDMEYYVHRIGRTGRAGRKGKAISLITPREKYKIRSLEDYCN
TKIKEKDMPTAASALTVKAYKSVSDAVEYCEGKDLTPYMKIVYKRCVDDGLDPLEVAAAF
LRMNLGEIEPESEQEPSEKRRLREKSHRNDKGKGDNESGEKKRRGEKSARGVKEKRKAEK
SGKGSSAKSKKGKKDGKRTNRSNQNRGHDKRRAGARKK
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgaattataatgaatcaatgattgacaagaggatactgaaaggcctggatgagatgggt
tttgttgaaatgacgccgattcaggagatggcgattccggtgcttctggaaggaaaggac
atcatcgggcaggcgcagactggaaccggcaaaacggcagctttcggtatccctatgata
gaaaaccttcgcagcaaagctagcggtgtgcagggactgattctctgtccaactagagaa
ctcgccattcaggcctcggaagaactgaaaaaaatggcaaaacatgtgcctggtgtaaaa
attggcgctatttacggcggacaggatattgagaagcagttccgccttctccgcggaaaa
ctttccatcgtagttggcacgccggggcgtgtgatggatcacatgcgtagaggtactttg
aagctggacgctttgcaaatgctggtacttgacgaagcggacgagatgctgaacatgggc
tttcgtgaggacatcgagaccatctgtgaggcgattcctgcggagcggcaaacggcgctg
ttttcggcgaccatgcctgatgaaatcatggaaattacaggaaaatatcagcgaaatgct
ttgcatatacacgtgccccaggaggaaatgaccattcctctcgtcaagcagacctattat
gtggtaaaaggaagggaaaaggatacttccctctgcaggcttctggactatatgtcaccg
aagcgggcgctgatcttctgcaatactaagcggaaagtcgaccaattgactttgattttg
aagggaaaaggctactcggcagaggctttgcacggggatttgtctcagcatcagagagat
cgggtcatgacccttttcagaagtggaaagctggagcttttgctggcgacggatgttgcg
gcaaggggcatcgatgtagacgatgtggatatggtgtttaactacgacatgcctcaggat
atggagtactatgtgcaccgaatcggcagaaccggtcgcgcaggcagaaaggggaaggcg
atttccctgattacgccgcgggagaagtacaaaattcgctccctggaggattactgcaat
acgaagattaaggaaaaggatatgccgacggcggcaagtgctttgactgtcaaagcgtac
aaatcggtgtcggatgctgtggaatattgtgagggcaaagacctgactccatatatgaaa
atcgtatataaacgatgtgtagacgatgggctggatccgctggaagtggcggcagccttt
ttgcgcatgaatctgggagaaattgaaccagagtcagagcaggaaccttcagaaaaacga
cgcctgcgagaaaaaagtcaccgtaatgataaaggaaaaggtgacaatgaatcgggcgaa
aaaaagcgtcgaggcgaaaaatctgcgcgaggtgtaaaggaaaagcgtaaggcggaaaag
tccggcaagggttcttccgcaaagagcaagaaaggtaaaaaagatggaaaaaggacaaat
cgttcaaatcaaaatagaggacatgacaaacgaagggcaggggctcggaagaagtaa
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