Exiguobacterium marinum: PTI97_02875
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Entry
PTI97_02875 CDS
T08845
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
emm
Exiguobacterium marinum
Pathway
emm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTI97_02875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emm03019
]
PTI97_02875
03009 Ribosome biogenesis [BR:
emm03009
]
PTI97_02875
Enzymes [BR:
emm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PTI97_02875
Messenger RNA biogenesis [BR:
emm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PTI97_02875
Ribosome biogenesis [BR:
emm03009
]
Prokaryotic type
rRNA helicases
PTI97_02875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
CMS1
Flavi_DEAD
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WDH76482
LinkDB
All DBs
Position
548428..549939
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AA seq
503 aa
AA seq
DB search
MTKFQDLQLSEALVKGVHKMGFEEATPIQAETIPVALTGVDVLGQAQTGTGKTAAFGIPT
IERIDSKARQVQALVLAPTRELAIQVAEELNKIGEAKRVYALPVYGGQQIDRQIRGLKKN
PQIVVATPGRLMDHMKRKTIKLDNIQTVILDEADEMLNMGFVEDIETILAGLPEERQTLL
FSATMPPQIKKIAERFMKSPTIIKVKAKEMTVENINQQFLELREGQKFDTLCRLIDIDSP
ELSIIFARTKKRVDEVTEALIKRGYTADGLHGDLTQSKRDQVIRRFKNGTIDILVATDVA
ARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGTALTFITPREFGQVKAIERVTN
KKMNRRHVPTIAEVLEGNQKQAAEELIERVQAGDFKAYTQLATELLEEYEAVELLAAALR
GLTKEPDSTPVEISYAEPVRVKRQGGRGGDRGGYRGRNDRRGGGGGGRGGDRRGGRSGDR
KGSYRGGDDRRRSDDRGPRRPRD
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaatttcaagacttacaattaagtgaagcattagtaaaaggtgtacacaaaatg
ggcttcgaagaagcaacaccgatccaagctgagacaattcctgtcgcactcacaggagtg
gacgtattaggacaagcacaaacaggtacagggaaaacagcagctttcgggattccgact
attgagcgaatcgattcaaaggcacgtcaagtccaagcactcgttcttgcaccgacacgt
gaacttgcgattcaagttgcagaagaattaaacaaaatcggagaagcgaagcgcgtttac
gctcttcctgtgtatggtggtcagcaaatcgaccgtcaaatccgtggtttgaaaaagaat
ccacaaatcgtcgttgcaacaccaggacgtctcatggaccacatgaaacgtaaaacaatc
aaacttgataacattcaaacagttatcttggatgaagcagacgaaatgcttaacatgggc
ttcgttgaagacatcgaaacgattttggcaggtcttcctgaagagcgccaaacgcttctc
ttctcagcaacgatgccaccgcaaatcaagaagattgctgagcgtttcatgaagtcgccg
acaatcatcaaagtaaaagcaaaagagatgacagttgagaacatcaaccaacagttcctc
gaattgcgcgaaggtcaaaaattcgatacgctttgccgtttgattgatatcgactcgcca
gaacttagcatcatcttcgctcgtacgaagaaacgtgttgatgaagtgacagaagcactc
attaaacgcggatatacagcagacggtcttcacggagacttgacgcaatcaaaacgtgac
caagtcattcgtcgtttcaaaaatggaacaatcgatatcttggtagcgacagatgtcgca
gcacgtggactcgacatctcaggcgtaacgcacgtttacaacttcgatgtgccacaagat
ccagagagctacgtacaccgtatcggtcgtactggtcgtgctggtaaaacaggtacagcc
ctcacgttcatcacaccacgtgaatttggacaagtgaaggcgattgaacgcgtaacgaac
aagaagatgaaccgtcgtcacgtaccgacgatcgcggaagtacttgaaggaaatcaaaag
caagcagctgaagagttgatcgaacgcgtgcaagcgggtgatttcaaagcttacacgcaa
cttgcaacagaactccttgaagagtacgaagcagttgagcttctcgctgctgcccttcgt
ggactgacaaaagagccagattcaacaccagttgaaatctcgtacgctgaaccagttcgt
gtgaagcgccaaggtggccgtggtggcgatcgtggtggataccgtggtcgtaacgaccgt
cgtggtggcggtggcggtggccgtggtggcgaccgtcgtggcggacgtagcggagaccgt
aaaggatcataccgtggtggtgacgatcgtcgtcgctcggatgaccgtggtccacgccgt
ccacgtgactaa
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