Exiguobacterium marinum: PTI97_03050
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Entry
PTI97_03050 CDS
T08845
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
emm
Exiguobacterium marinum
Brite
KEGG Orthology (KO) [BR:
emm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
emm03016
]
PTI97_03050
Enzymes [BR:
emm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PTI97_03050
Transfer RNA biogenesis [BR:
emm03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PTI97_03050
Prokaryotic type
tRNA splicing ligases
PTI97_03050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ADAMTSL1
Motif
Other DBs
NCBI-ProteinID:
WDH76515
UniProt:
A0ABY7X3G1
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All DBs
Position
584523..585701
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AA seq
392 aa
AA seq
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MEITGKYNRAKVFNERIDDMTRSQIQTLLDQPFTQGASIRIMPDMHAGKGSVVGTTMTIQ
DKVVPNLVGVDLGCGMLCTEIKARRIDFQRLDDVIRELVPSGMNIRDKVHPYASELPLEE
VRAPYKLDRALRSVGSLGSGNHFIEVNRDDSGRTFLVIHSGSRHLGVQIADHYQERAIQH
MMETKDVKEAIERLKDTGRQKEISTYLEVEREARKSFQDLAYVEGEDMDDYMHDVRIAQQ
YAAANRRAMTDVIVEAMKWNVVDQFDTVHNYIDHDAMILRKGAISAQEGERVIIPMNMRD
GSLICTGKGNPDWNFSGPHGSGRIMSRSAARKRVDFKEFKRTMEGVWSTSVRPSTVDESP
FVYKSMKEIVRYIEPAVSIDQVIKPLYNFKAN
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atggaaatcacggggaaatataaccgcgccaaagtattcaatgaacgaatcgatgacatg
acgcggagtcagattcaaacgctacttgaccaaccgttcacacaaggggcatcgattcgg
atcatgccggatatgcacgccggtaaagggtcggtcgttgggacgacgatgacgattcag
gataaagtcgtgcctaacctggtcggtgtcgacttaggatgtgggatgctttgtacggaa
atcaaagcaaggcggatcgactttcaacgactcgatgacgtgatccgtgaactcgtaccg
agtggaatgaacattcgtgataaggttcatccatatgcttctgaacttccgctagaagag
gtgcgggcgccgtataaactcgaccgtgccttgcgctcggtcggatcgctcggctcagga
aatcactttattgaagtgaaccgagatgactcgggacgtacgtttctcgtcatccattcc
ggttcacgccatctcggtgtacagattgccgatcactatcaagagcgcgcgattcaacac
atgatggaaacgaaagatgtaaaagaagcaatcgaacgattgaaggatactggacgccag
aaagaaatctcgacgtatctggaagtggaacgagaagcgcggaaatcattccaagacttg
gcttatgtcgaaggagaggacatggacgattatatgcatgacgttcgcatcgcccaacaa
tacgcagcggcgaaccgtcgcgcgatgacagatgtgatcgtggaagcgatgaagtggaac
gtcgtcgatcaattcgacaccgttcataactatatcgaccatgatgcgatgattctacga
aaaggagccatttccgcgcaagaaggagagcgtgtcatcattccgatgaacatgcgagac
ggttcgctcatctgtaccgggaaagggaacccggactggaacttctcgggtccgcacggg
tcagggcgaatcatgtctcgctcggcagcacgtaaacgcgtcgacttcaaagaattcaaa
cgtacgatggaaggcgtttggtcgacatcggttcgaccatctacggtggatgagtcacca
ttcgtctacaaatcgatgaaagaaatcgtccgttatatcgaaccggccgtcagcatcgat
caagtcatcaaaccgttgtacaacttcaaggcgaattga
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