Exiguobacterium marinum: PTI97_05955
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Entry
PTI97_05955 CDS
T08845
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
emm
Exiguobacterium marinum
Pathway
emm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PTI97_05955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emm03019
]
PTI97_05955
03400 DNA repair and recombination proteins [BR:
emm03400
]
PTI97_05955
Enzymes [BR:
emm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PTI97_05955
Messenger RNA biogenesis [BR:
emm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PTI97_05955
DNA repair and recombination proteins [BR:
emm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PTI97_05955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
TniB
Glycos_transf_1
AAA_30
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
WDH77061
LinkDB
All DBs
Position
1159786..1161213
Genome browser
AA seq
475 aa
AA seq
DB search
MRHLYESTLKRVFGYDSFRPGQHDIIQAVVEGQDVLAVMPTGAGKSLTFQLPSYIKNGGL
TVIVSPLLSLIEDQMLHIRERGERGVARLTSMESIEEKQDIINHLKRYRFLYLSPEQLAV
PYVTRALANVKIQMLVIDEAHCISQWGHEFRPEYARLGELRKQIGSPQCMAVTATAPESV
KQDIVEKLALFSPEQFVHSANRPEIRLMVERLEKEKKLERLKELVREIPKPIVVYTATRR
EAEALAFELEDALFYHGGMSTEDRRLVQSQFLRNEVSVMVCTSAFGMGVNKDNVRSVIHF
QLPATVEAYMQEIGRAGRDGQPAFAVLLYADGDERIQQFLIDGQYPKDEDVRLAYFEREN
GISLAQLPRLLKMNEEDSKFLLLKQLLSERSLQEALDWVKERRRDRYRQLGQMMDYALIR
TCRRDYLLRYFSEPTIEQNECCDVCGPIVFPDTPKIVRKNVTEWKIRLTQIFSFE
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
gtgagacatttgtatgaatcgacattgaaacgagtctttggatatgattcgttccgacct
ggtcaacacgacatcattcaagcagtggtggaaggacaggatgtcttggccgtcatgccg
accggtgcgggaaaatcgttgacgtttcaactcccttcctacataaagaatggaggtttg
acggtcatcgtctcgccgctactctccttgattgaagatcaaatgcttcatatccgggaa
cgtggtgagcgtggcgtagcccgattgacatctatggagtcgattgaagaaaagcaggac
atcatcaatcatttgaagcgttatcgttttttatatctctctcccgaacaactggctgtt
ccttatgtcacgcgtgcgttggcgaatgtgaaaattcaaatgcttgtaattgatgaagcg
cattgtatctcccaatggggccatgaatttagaccagaatatgcccggttaggcgagttg
cgaaagcaaatcggcagcccgcaatgtatggcggtcacggcgacggctcctgagagcgta
aagcaggatatcgttgagaagttagcactcttctcacccgaacaattcgttcattctgcc
aatcgacccgagattcgattaatggtcgagcgactggagaaagagaagaaactcgagaga
ctgaaggaattagttcgagagattccgaaaccgatcgtcgtttacacggcaacacgtcgg
gaggcagaggcgctggcgtttgagctagaagacgcattgttttatcacggtggaatgtct
acagaagaccgacgactcgtgcaatctcaattcttacggaacgaggtgtcggtcatggtc
tgtacaagcgcgttcggaatgggggtcaataaagataacgttcgttcggtcatccacttc
caattacctgcgacggtcgaagcgtatatgcaggaaatcggccgggccggacgcgatgga
cagcctgcgtttgctgtgctcctatatgcagatggggacgagcgaatccagcagtttttg
attgacggtcaatatccaaaagacgaggatgttcgtttggcgtattttgagcgtgagaac
ggcatctctctagcgcagctaccgcgtttactaaaaatgaatgaagaagattcaaaattc
ttgttgttaaagcagttgttgtccgaacgttctcttcaagaagcactggattgggtaaaa
gaaagaaggcgcgaccgataccgtcagcttggacagatgatggattatgcactcattcgc
acgtgtcggcgcgattatttactacgctacttttcggaaccaacgattgaacaaaacgaa
tgttgcgatgtatgtggccccatcgtgttcccagacacacctaaaatcgttcggaaaaat
gtgacagaatggaaaatacggttgacgcaaatcttttcctttgaataa
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