Exiguobacterium marinum: PTI97_13900
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Entry
PTI97_13900 CDS
T08845
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
emm
Exiguobacterium marinum
Pathway
emm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
emm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PTI97_13900 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
emm03400
]
PTI97_13900 (mfd)
Enzymes [BR:
emm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PTI97_13900 (mfd)
DNA repair and recombination proteins [BR:
emm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PTI97_13900 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
CarD_TRCF_RID
TRCF
Helicase_C
ResIII
UB2H
Cas3-like_C_2
MFD_D3
RecG_dom3_C
AAA_22
IstB_IS21
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
WDH75890
LinkDB
All DBs
Position
complement(2718185..2721712)
Genome browser
AA seq
1175 aa
AA seq
DB search
MNALERFMVALPETNIIRERLQKVDRQLVTGLTTSAKALVLAGLVKSSARRLVVVTHNMY
QAQKMFDQLESLVGPDQTLLYPIDETLAGELSLTSSPELLAARIDARTRLLDQTGGVVVV
PLGGLRRYMPSPKAWQDSRVMLKPGSDLDLADFAKQLSGMGYERTATVTTPGEFSVRGSI
LDVYPLTESRPYRIDLFDTEIDSIFTFDAETQRSLGVVGEVCITPATEFIATENQLKQAG
GALRKQYNRTVELIENEVIRQALEEGIVTDIERLERGDFPDKVGKYSPLLYTSTLLDYVG
KDAVLILDEVARIDDAADVQDREDAEWFSSLIEKGEAVSNYTLAVPMHKVFLDLKQVAFS
LLPSRRSGIPETDTVHLSCRPLPAFHGQMHLLKQEVERWQQGDQRIVVLAGDRSRADKIT
ALLSDYGISSTFTNVDGELEPRRVSVIIGQIEGGFELSTSRLVVVSEEELFKRVTKRKRQ
TKNLTNAERIKSYQELKPNDYVVHVHHGIGKYLGIKTIEVGGIHQDYLHLVYAGDDALYV
PVDQIDLVQKYVGAEGKEPKIYKLGGTEWKKVKSKVAKSVEDIADELIKLYAAREASVGF
AFPSDDEEMSQFESSFPYAETEDQVRSIAEIKADMERSRPMDRLLCGDVGYGKTEVAIRA
AFKAVLAGKQVAFLVPTTVLAQQHYETMLERFSEFPINVSVMSRFRSKSEMTATKKGLKE
GTIDIVVGTHRVLSKDVTFANLGLVIIDEEQRFGVKHKERLKQLKTNIDVLTLTATPIPR
TLHMSMIGIRDLSVLETPPENRYPVQTYVMEYDGIVLREALERELARGGQAFFLYNRVEG
IERKAEEIRALLPEARIATAHGRMTESELESQLISFLEGEADILVSTTIIETGIDIPNVN
TLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYRKDKRLTEVAENRLQAIKEFTELGS
GFKIAMRDLSIRGAGNLLGAQQSGFIDSVGFDLYSQMLSEAIEERKDRMRGQAKQVVFKP
EIAFQADAYIPDNYLSDSELKIEMYKRFKYADTPSALFALQDELIERFGEFPEPVALLIQ
LTRLRIYGELAKVSRIKQTPGRIEIVLSKESTAALDVSSFMEWTMPLGRKLGVGQEDGAL
KLSLSGRVPLTELLNDADTVLEELTKRLVGDAVAK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctttagaaagatttatggtggcgctccctgagacgaatatcattcgcgagcgg
ctacaaaaagtggaccgtcaattggtaacgggtctgacgacgagcgcgaaagctcttgtc
ttagcaggactcgtgaaatcgtcagcgagacgcctcgtcgtcgtgacacacaatatgtat
caagcacaaaaaatgtttgatcaacttgaatcactcgtcggccctgatcaaacactgctt
tatccaattgatgagacgctagcaggtgaactatcactgacatctagtccggaactgttg
gccgcccgaatcgatgcccgtacccgtctccttgaccaaacaggaggcgttgttgtcgtg
ccactcggtggattacgacgttacatgccgagtccaaaagcatggcaagacagccgcgtc
atgttgaagcctggaagtgatctcgatttagcggattttgcgaaacaattgtcggggatg
gggtatgaacggacggcaactgtaacgacgccaggggagttttccgtgcgaggtagtatt
ttagacgtctatccactcacggaatcacgcccgtatcggattgacttgttcgacacggag
attgattcgattttcacgtttgacgcggagacgcaacgttcgctcggggtggtaggggaa
gtgtgtattacgcctgcgactgagttcatcgcaacggagaaccagctgaagcaggcgggt
ggcgcgcttcggaagcagtacaaccgaaccgtcgagttgattgagaatgaagtcattcgc
caggcacttgaagaaggcatcgtgacggatatcgaacgtttagagcggggtgatttccca
gataaagtaggaaagtattcgccacttctttatacatcaacgcttcttgattacgtagga
aaagacgccgtacttattttggatgaagtggcacgaattgatgacgccgcggatgtacag
gaccgggaagacgccgagtggttctcttcgctcatcgaaaaaggggaagcggtcagtaac
tacacgctcgccgtcccaatgcataaagtgttccttgacttgaaacaagtggccttctca
ttattgccgtctcgtcgttcagggatacctgagaccgacacggttcatttgagctgtcgt
ccgctaccggcattccacggacagatgcacttattgaaacaagaagtggaacgttggcaa
caaggtgatcaacgaattgtcgtgctcgcgggagatcggtcgcgtgcagataaaataaca
gcacttctttcagactacgggatttcctcgacgtttacgaatgtcgatggagagttagaa
ccgagacgtgtgtccgtcattatcggtcaaattgaaggtgggtttgaattatctacgagt
cgccttgtcgttgtatcagaggaagaactgttcaaacgtgtgacgaaacggaaacgtcag
acgaagaacttgacgaacgcggaacgaatcaagagttaccaagagttgaagccgaacgat
tatgtcgtccacgtgcaccatggaatcggaaagtatttaggcattaaaacgattgaggtt
ggggggattcatcaggattaccttcatctcgtctatgctggtgacgatgccctttacgta
ccagtcgaccaaattgatctcgtgcaaaaatatgtcggggcagaaggaaaagaaccgaag
atttataaactgggtggcacggaatggaagaaggtcaaatcgaaggtcgctaaatcggtt
gaagacattgccgatgagttgattaaattgtatgcggcacgagaggcctcggttggtttt
gcgtttccgtcggacgatgaagagatgagtcagtttgaatcttcattcccgtacgctgaa
acagaagatcaagttcgctcgattgctgaaatcaaagcagatatggaacgctcgcgtccg
atggatcgtctcttatgtggagatgtcggatatgggaaaacggaagtggcgattcgggcg
gcatttaaagcggtactcgccggaaagcaagtcgcatttcttgtcccgacgaccgtcctc
gcccaacagcattatgagacgatgctcgaacgattcagcgaatttccaatcaatgtgtcg
gtcatgagccgtttccgctcgaaaagtgagatgaccgcgacgaagaagggcttgaaagaa
gggacgattgatattgtcgtcggtacacaccgcgtgttgtctaaagacgtgacgtttgcc
aatctcggtctcgtcatcatcgatgaagaacaacggttcggcgttaaacataaagaacgt
ttgaaacaactgaagacgaatatcgacgtgctcacgttgactgccacaccgattccacgg
acgctccatatgtcgatgattggaatccgtgacttgtccgtattggaaacaccacccgaa
aatcgatatccggtccaaacatatgtcatggagtatgacgggatcgtcttgcgtgaagct
ttagagcgtgaactcgctcgtggtgggcaggcgttcttcctctataaccgtgtcgaaggt
atcgaacgaaaagcggaagaaattcgtgccctattaccggaagcgcgcatcgcgacggca
catggacggatgacagagagtgagctcgaaagccaattgatcagctttttagaaggagaa
gcagatattttagtctcgacgacaatcatcgagacgggaatcgatattccaaacgtcaat
acacttatcgtccatgatgctgacaagatggggttgtcgcagctctatcaacttcgtggt
cgtgtcggacgctcgaatcgaatcgcctacgcgtacttcacctatcgaaaagataagcga
ttaacggaagtcgccgaaaatcgacttcaggccattaaagagttcacggagctcggaagt
ggctttaagattgcgatgcgggacttgtcgattcggggtgctggtaatttgctaggtgca
caacaatcagggtttatcgattcggtcggtttcgatctgtactcacaaatgctctccgaa
gcaatcgaggagcggaaagaccgaatgcgtggacaagcaaaacaagttgtattcaagccg
gaaattgcattccaagcggatgcgtatatcccagacaattatttgtcggatagtgaatta
aaaatcgagatgtacaaacgtttcaaatatgcggatacgccaagcgcattattcgccctg
caagacgaattgattgagcgatttggtgaattccctgaaccggtcgcgcttctcattcaa
ctgacgcgcttacgtatttacggagaactggcaaaagtgagtcggatcaagcaaacaccg
ggacgtattgaaatcgtcttatcaaaagagtcgacagctgcacttgatgtatcatccttc
atggaatggacaatgccgctcggtcgcaaacttggggtgggtcaagaagatggggcgttg
aaactatcgctcagtggccgtgtccccctaacagagctcctaaatgatgccgatactgta
ttagaggaactgacgaagcggttggtaggcgatgcagtcgccaagtaa
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