Elizabethkingia anophelis FMS-007: M876_16360
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Entry
M876_16360 CDS
T03946
Name
(GenBank) protein rtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
emn
Elizabethkingia anophelis FMS-007
Brite
KEGG Orthology (KO) [BR:
emn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
emn03016
]
M876_16360
Enzymes [BR:
emn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
M876_16360
Transfer RNA biogenesis [BR:
emn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
M876_16360
Prokaryotic type
tRNA splicing ligases
M876_16360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKH96127
LinkDB
All DBs
Position
complement(3523888..3525279)
Genome browser
AA seq
463 aa
AA seq
DB search
MGNLKLKGKDILKIGYPNNQSVNVALEVMKRNFATKNIHYVKSLLKEILLHPENYQKDLS
FGQIAEALLLSKKTEKRMLNNQRAAFQVFGHNISEEAKNQLYTALKLPISLQGALMPDAH
SGYGLPIGGVLAVENAVIPYGVGMDIGCRMSLSILDTPVSYLDGAKDKYEKALAEHTKFG
MYETHKSHIEHEIFERDTFGMIPVLRRLKAKAIKQMGTSGGGNHFVEFGEVEITEEDSQI
GLPKGNYLGILSHSGSRGLGAEIAQYYSRVAVEQCPLPKEARQFAWLDLSTHMGLEYWTA
MTLAGDYASACHDDIHRRLVKAVGGRVKSKIENHHNFAWKEIHNGKEVIVHRKGATPANE
NELGMIPGSMTAKGFIVRGKGNPDSLHSASHGAGRAHSRGACRSLFTQSDIRKELQLKNV
TLMGGNTEEAPMAYKDIHEVMNAQSELVDILGTFQPRIVRMDK
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggaaatttaaaacttaaaggaaaagatatattaaagattggctatcctaataatcag
agtgttaatgttgctctggaagtcatgaaaagaaattttgcaactaaaaatattcattat
gtaaaatctcttttaaaagaaattctattacatccggaaaactatcaaaaagacttaagt
ttcggacaaatagcggaagctttattattatctaaaaagactgaaaaacgaatgctgaat
aatcagagggctgcatttcaggtttttggacacaatatttcagaggaggcaaagaatcag
ctttatactgctctaaaattgccaatatcgcttcagggagcattaatgcctgatgcacat
agcggttatggactgcctattggtggtgttttggctgtagaaaatgctgtaattccatac
ggagtaggaatggatattggttgcagaatgagtcttagtattctggatactccggtttca
tatttggacggagcgaaagataaatatgaaaaagcactggcagaacataccaaattcggg
atgtatgaaacccataagtctcatattgagcatgagatttttgaaagagatactttcgga
atgattccggtgctgcgaagactgaaagcaaaagctattaaacagatgggaacatccgga
ggcggaaatcatttcgtagaatttggtgaagtggagattacagaagaagatagccaaatc
ggccttccaaaagggaattatctggggattttatctcatagtggctcccgtggtctggga
gcagagattgctcagtattattccagagttgctgtagagcaatgtccgttgccaaaagaa
gcacggcagtttgcttggttggatctcagtactcatatgggcttagaatactggaccgca
atgaccctggccggagattatgcttcagcctgtcacgatgatattcaccgcagattggtt
aaagccgtaggtgggagagtgaaatctaaaatagaaaatcatcacaactttgcctggaaa
gaaattcataatggaaaagaagtgattgttcaccgtaagggagcaaccccggctaatgaa
aatgaactgggaatgattccgggatctatgacggcaaaaggatttattgttcgcggaaaa
ggtaacccggattcattacattcagcttcccatggtgccgggagagcccattccagagga
gcatgcagaagtctttttacacaaagtgatatcaggaaagaactgcaattaaagaatgta
acactaatgggcgggaatactgaagaagctccaatggcgtataaagacattcatgaagta
atgaatgcacaaagcgaattagtagacattctgggaacatttcaaccgagaattgtaaga
atggataagtag
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