Entomomonas moraniae: DM558_04515
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Entry
DM558_04515 CDS
T06727
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
emo
Entomomonas moraniae
Pathway
emo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM558_04515 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emo03019
]
DM558_04515 (rnr)
03016 Transfer RNA biogenesis [BR:
emo03016
]
DM558_04515 (rnr)
Enzymes [BR:
emo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DM558_04515 (rnr)
Messenger RNA biogenesis [BR:
emo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DM558_04515 (rnr)
Transfer RNA biogenesis [BR:
emo03016
]
Prokaryotic type
tRNA degradation factors
DM558_04515 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
MCM5_C
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
AZS50082
UniProt:
A0A3S9XC91
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All DBs
Position
937889..940381
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AA seq
830 aa
AA seq
DB search
MANWHDIDPEAKLEASKYERPIPSRVLILKHLEDRGAPATKEQLIAEFEIHEEEQQEAIK
RRLRAMERDGQVIYTRRGAYAPVNKLDLIGGKVIGHRDGFGFLAPDDGGDDLFLSPAQMR
LVFDGDRALARVTGYDRKGRREGAIVEVTDRAHTTLVGRYYNEAGLGHVIADNPKIPQEI
LIPPSKQGKAKHGQFVEVTIEQWPTVFRQAQGAITDIIGNYMAPGMEIQIALRSYEIPYE
WPKVIEKETARIKPDVSEKDKRKRVDLRELPFVTIDGEDARDFDDAVYAETTKTGWKLYV
AIADVSHYVQLGSALDEEAEKRGTSVYFPAQVIPMLPEVLSNGLCSLNPLVDRLAMVCEM
EVNKKGEMLDYTFYEAVINSHARLTYNKVSKLLESPNCIDAKQMRKETPHIISPLKHLYA
LYKVLLTARFKRHAIEFETQETRIVFGSDRKIKEIVPTVRNEAHRLIEECMLCANVAAAS
FLKDNNIEGLFRVHDGPSEEKQQKLQAFLNSLGLQLHKGIDEATPEDYANLLEKIKDRPD
FSLIQTVMLRSMGQAHYTPDNEGHFGLNYEAYTHFTSPIRRYPDLLVHRAIRSIIRSKKQ
ATHIRREGASSLLKSRIYPYDVAQLEKLGEYCSMCERRADEATRDVVNWLKCEYMQEKVG
DSFSGIITAVTGFGLFVELSDIFVEGLVHITALPGDYYTFDATYHQLRGERSGRIFRLGD
TIEVIVTRVDMDDRKIDFDLAENAQNVKKSKPKATIAKKEVKSRDFKSKNVAHKKANTKK
RIKKQKKSTPDSKELKIPQVASAATSTSEKPKSTRQKSKSVKRKPRVKKV
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggccaattggcatgatattgatccagaggcaaaattagaagcctctaaatatgaaaga
cctattcctagccgggttttgattttaaaacatctggaagaccgcggggcgcctgcaact
aaagaacagttaatagcagagtttgaaattcatgaagaagaacaacaagaagctattaaa
agacgtttgagagctatggaacgtgatggacaagtcatttatactcggcggggcgcttat
gctcctgtcaataaattagatttaattggtggtaaagtgattggtcatcgcgatggcttt
ggctttttagcacctgatgatggtggagatgatctttttttaagccccgcacaaatgcgt
ttagtctttgatggtgacagggcgttagcacgtgttacaggctatgaccgtaaaggaaga
agagaaggggcgattgtcgaagtgactgatcgtgcacatacgacacttgttgggcgctat
tacaatgaagccggacttggtcatgttattgctgataatcctaaaattccccaagaaata
ttaattccaccttcaaagcaagggaaggctaaacacggccagtttgttgaagttactatt
gagcaatggcccactgtctttcgtcaagcacaaggtgctatcacagatattattggtaac
tatatggctccgggaatggagatccaaatagcattacgtagctatgaaatcccttatgaa
tggccaaaagtaatagagaaagagacagcaagaatcaaacccgacgtttctgaaaaggat
aaaagaaaacgagtagacttgagagagctacctttcgttactatcgatggggaggatgct
cgtgactttgatgatgctgtatatgcagaaacaactaaaactggttggaaactttatgta
gctattgcagatgtttctcattatgtacagcttggttcagctcttgatgaagaagctgag
aaacggggaacctctgtttacttcccagctcaagtgattccaatgcttcctgaggtttta
tcaaatggcctatgctccctaaaccccttagtcgatagacttgctatggtctgtgaaatg
gaagttaataaaaaaggggagatgttagattatactttttacgaagctgttatcaactcg
catgcacgtctaacctataataaagtaagtaaacttttagaaagccctaactgcatagat
gctaaacagatgagaaaggagacgccgcatattatatctcctttgaaacatctgtatgca
ttatataaagtgcttttgacagcgcgctttaaacgacatgctattgagtttgagacacaa
gaaacacgtattgtttttggttcagatcgcaaaataaaggaaattgtccctaccgttcgt
aatgaggcacaccgacttatcgaggaatgcatgctttgtgctaacgttgcagcggcatct
tttttaaaagataataatattgaagggctattccgtgtacacgatggcccctcagaagag
aaacaacaaaaattacaggctttcttaaatagtttaggattgcaacttcacaagggtatt
gacgaagcaacccctgaagattatgcgaatttattagaaaaaattaaagaccgacctgat
tttagtttaattcaaactgttatgttacgctctatggggcaagcacattatactccagat
aacgaagggcactttgggcttaattatgaagcttacacccatttcacatcacctattcgt
cgttatcctgatttattagtgcaccgagcaatacgcagtattattcgctccaaaaaacaa
gcaacccacatacgtagagaaggggcttctagtttactgaaatcacgtatctatccttat
gatgtagctcagttagaaaaactaggtgagtactgctctatgtgcgagcgtcgtgccgat
gaagcaacaagagacgtagttaactggttgaaatgtgaatatatgcaagaaaaagtgggt
gatagtttctctggtatcatcactgcggttacaggttttggtctatttgttgagctctca
gatatttttgtggaaggacttgtacatattactgcgttgccaggagattattatactttt
gatgcgacctatcatcagctacgaggagagcgtagtggccgtatttttagattaggtgac
actattgaagtaattgttactcgtgtagatatggacgatcgaaaaattgactttgatctt
gctgaaaatgcacaaaacgtcaaaaaatctaaaccaaaagcaactattgcaaaaaaagaa
gttaaatcaagagattttaaatctaaaaatgtagcacataaaaaggctaatacaaaaaaa
cgcattaaaaaacaaaaaaaatcaactccagatagtaaagaattaaagatacctcaagtg
gcatcagcagctacgtctacttctgaaaagcctaaaagtactcgtcaaaaaagtaaatct
gttaaaagaaaacctagagtgaaaaaagtatga
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