Entomomonas moraniae: DM558_13710
Help
Entry
DM558_13710 CDS
T06727
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
emo
Entomomonas moraniae
Brite
KEGG Orthology (KO) [BR:
emo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
emo03016
]
DM558_13710
Enzymes [BR:
emo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DM558_13710
Transfer RNA biogenesis [BR:
emo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DM558_13710
Prokaryotic type
tRNA splicing ligases
DM558_13710
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
AZS52265
UniProt:
A0A3Q9JMT6
LinkDB
All DBs
Position
2909322..2910539
Genome browser
AA seq
405 aa
AA seq
DB search
MDFNVLKTETSRPVKMWTKGVPVDDGAKDQLLKTATLPFIFKHIAVMPDVHVGKGSTIGS
VIPTKSAIIPAAVGVDIGCGMIAVQTSLMANDLPDNLHPLRLAIEKAVPHGLSPMKGRRD
KGSWETPPTIIDEYWRQLLPGFEKLTQKYPQFLKTNNYRHLGTLGTGNHFIEICLDEADR
VWIMLHSGSRGVGNAIGSFFIELAKKDMERHFINLPNKDLAYLVEGTEHFDDYIEAVHWA
QEFARLNREAMMHNVIMAMHKVITKPFSTHLLAVNCHHNYVQKEHHFGENIFITRKGAVS
ARKGEFGIIPGSMGARSYIVRGLGNEESFCSCSHGAGRVMTRTEAKKRFTVEDQIKATAH
VECRKDANVIDEIPMAYKDIDAVMLAQKELVEIVHQLTQIVCVKG
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggattttaacgtattaaaaactgaaactagtagacctgtaaaaatgtggacaaaagga
gtgcctgttgatgatggagcaaaggatcaactacttaaaacagccacattaccttttatt
tttaagcatattgctgtaatgccggatgtgcatgtgggtaaaggttctactattggaagt
gtgattccaacgaagtcagcgattattcccgctgcggtgggggttgatattggttgtggt
atgattgctgtgcaaacttctttaatggcgaacgatttgcctgataatttgcatccttta
cgattagcaattgagaaggctgttcctcatggcttatcgcctatgaaaggaagacgtgat
aaagggagttgggaaacaccacctacgattattgatgaatattggcgtcagttattgcca
ggcttcgaaaagttaacccaaaagtacccacaatttttgaaaacaaataactatcgccat
ttaggaacattgggaacaggtaaccattttatagaaatctgtttggatgaagccgatcgt
gtttggattatgttacatagtggttctcgtggtgtaggtaatgcgattggtagttttttc
attgagttagctaaaaaagatatggaaagacactttattaatttacctaataaagatttg
gcttatctggtagaggggacagagcattttgatgattatatagaggcagtgcattgggct
caagagtttgcgaggttaaatcgtgaagcaatgatgcataatgtgattatggctatgcat
aaagtgattactaaaccattttcaactcatttattggctgtaaattgtcaccataattat
gtgcaaaaagagcaccattttggtgagaatatatttattacccgaaaaggagctgtatct
gcacgtaaaggtgaatttggaattattccaggatcgatgggggcaagaagctatattgtt
cgtggtttaggaaatgaagaaagtttctgttcttgctctcatggtgcaggacgtgtaatg
acaagaacggaagctaaaaaaagatttactgttgaagatcagattaaagctactgcgcat
gtggagtgtcgaaaagatgctaatgtgattgatgaaattccaatggcttataaagatatt
gatgcagtaatgttagctcagaaagagctggttgaaattgttcatcagttaacacaaatt
gtttgtgttaagggatga
DBGET
integrated database retrieval system
