Entomomonas moraniae: DM558_14280
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Entry
DM558_14280 CDS
T06727
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
emo
Entomomonas moraniae
Pathway
emo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
emo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DM558_14280 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emo03021
]
DM558_14280 (rpoC)
03400 DNA repair and recombination proteins [BR:
emo03400
]
DM558_14280 (rpoC)
Enzymes [BR:
emo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DM558_14280 (rpoC)
Transcription machinery [BR:
emo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DM558_14280 (rpoC)
DNA repair and recombination proteins [BR:
emo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DM558_14280 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
BSH_YknX
Motif
Other DBs
NCBI-ProteinID:
AZS51860
UniProt:
A0A3Q9JKN8
LinkDB
All DBs
Position
3016991..3021193
Genome browser
AA seq
1400 aa
AA seq
DB search
MKDLLNLLKNQGQPDEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFADEFDARM
GAEAIRELLIQIDLDHEINTLREEIPQTNSETKIKKLSKRLKLMEAFKNSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPA
LRLHQCGLPKKMALELFKPFIFGKLEARGIATTIKAAKKMVERELPEVWDVLADVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNVLSPANGEPVIVPSQDVVLGLYYMTREAINAKGEGRIFSDLQEVDRSYRAG
EASLHAKIKVRINEVVKDRDSKEITKNTRVVDTTIGRALLFQIVPKGLSFDVVNQPMKKK
AISKLINQAYRTVGLKDTVIFADQLMYTGFAFSTLSGVSIGVNDFVIPAEKKVIIEKATK
EVKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESF
NSMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIIANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVVTETDCGTDQGLLMTAHIEGGEIVEPLSERV
LGRVVAQDVMKPGTKSDVIIPAGTLLDEKWVEFVEDSNVDEIFVRSSITCESRHGLCAKC
YGRDLARGHLVNMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAIDSVQVRSAGTA
KLHNLKYVIRADGALVAVSRSGELAIADEFGRERERYKLPYGAVIMINDGDKVEAGAVIA
KWDPSTHPIISEVEGIVSFVGMEEGITIKRQADELTGLTNIEVMDQKDRPAAGKDIRPAV
KLLDAKGKDLLLPGTDVPAQYLLPANALVSLTDGAKIGVGEVIARIPNETVKTRDITGGL
PRVADLFEARRPKEPSILAEISGTISFGKETKGKRRLVITPVDGGEPYEELIPKWRHLNV
FEGEQVSRGEVISDGPSNPHDILRLLGVSALANYIVQEIQEVYRLQGVKINDKHIETILR
QMLRKVEITESGDSSLIKGDQAELTKVLEENEILVAANKFTAKYERVLLGITKASLSTES
FISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLTYHNERKQNRDIDTN
QVTADEVEAALTEALNLSES
NT seq
4203 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttgcttaatttattaaagaatcaaggtcaaccagatgagttcgatgcaatc
cgaattggtctggcttcgcctgagatgatccgttcttggtcttttggtgaagttaaaaaa
cctgaaaccatcaattatcgtacgtttaagcctgagcgtgatggtttattttgtgccaag
atctttggaccagtaaaagattatgagtgcttatgtggaaaatataagcggctaaaacac
cgtggtgtgatttgcgagaagtgtggcgttgaagttgccttaactaaagtacgtcgtgaa
cgtatgggacatatcgagttagcttcacctactgctcatatttggttcttgaaatcacta
ccttcacgtattggtctattattagatatgacattacgcgatattgagcgcgttttgtat
tttgaaagttatgttgttattgacccaggtatgacaaccttagaaaaaggtcaattactt
aatgatgagcaatactttgaagcattggaagagtttgctgatgaatttgatgctcgcatg
ggggctgaggcaatccgtgagttattaattcaaatcgatttagatcatgaaattaataca
ttacgtgaagagattccacagacaaactctgaaactaaaattaagaaattgtctaagcgc
ttgaaattaatggaagcgttcaaaaattctggtaataaacccgaatggatgattttaaca
gttttaccagtattaccacctgatttacgtcctttagtaccgttagatggtggccgtttt
gcgacgtcagacttgaatgatttatatcgccgtgtaatcaatcgtaataatcgcttgaag
cgcctattagatttatctgcacctgatattattgtccgcaacgaaaaacgtatgctacaa
gagtcggttgatgcgttattagataatggtcgtcgtggacgtgcaattactggttctaat
aagcgcccattaaaatcattggcagatatgatcaagggtaagcaaggtcgtttccgtcaa
aacttattaggtaagcgtgttgactactctggtcgttctgttattacggtagggcctgca
ttgcgtttacaccagtgtggtttgcctaagaaaatggcattagaactatttaaaccgttc
atttttggtaagttagaagctcgcggaattgcgacaacaatcaaagccgctaagaaaatg
gttgagcgtgaattaccagaggtttgggacgttttagcggatgttattcgtgaacatcca
gtattattaaaccgtgcaccaacacttcaccgattaggtattcaagcatttgaacctgta
ttgattgaaggtaaggcgattcagttacatccgttagtatgtgcggcgtataatgccgac
ttcgacggagaccaaatggctgtgcatgttccattaacaatcgaagctcagttagaagca
cgtgcgttgatgatgtcgaccaataatgtgttatcacctgcaaacggtgaacctgttatt
gtaccttcgcaagatgtggtattgggtctttactatatgacccgtgaagcgattaatgcc
aaaggtgaaggtcgtattttttctgatttacaagaagttgatcgctcttaccgtgcaggt
gaagcatcgcttcatgcaaagattaaagtgcgtatcaatgaagtagttaaggatcgtgat
tctaaagaaatcactaagaatacacgtgttgttgatacgacaataggtcgtgctttatta
ttccaaattgtgcctaaaggtttatcttttgatgtggttaatcaacccatgaaaaagaaa
gcgatttctaagctaattaatcaggcttatcgtacagttggattaaaagatacagtgatt
tttgctgatcaattgatgtacactggttttgcattttcaacgttatcaggtgtttcaatt
ggtgtgaatgactttgttattcctgctgaaaagaaagttattattgaaaaagcaaccaaa
gaagttaaagaaattgaaagtcagtatgcttctggtcttgtgactcagggtgagaagtat
aataaggtaattgacttatggtcaaaagccaatgatgaagtttctaaagcgatgatggcg
aacctttcaaaagaaaaggtcattgatcgagaaggtaaagaggtagagcaagaatcattt
aactccatgtatatgatggctgactcgggcgcacggggttctgctgctcagatccgtcag
ttagcgggtatgcgtggtctgatggcgaagccagatggttctattattgaaacgcctatt
attgcaaacttccgtgaaggcctgaacgtattacagtacttcatttctactcatggtgcg
cgtaaaggtcttgctgatacagcattaaagacagctaactctggttacttaacacgtcgt
ttagttgatgttgcacaagatttggttgtgacagaaacagattgtggtacagatcaaggc
ttattaatgactgctcatattgagggtggtgaaattgttgagccattatctgagcgtgtg
ctaggtcgtgtagttgcacaagatgtgatgaagcccggaactaagagcgatgtcataatc
cctgcaggtactttacttgatgaaaaatgggttgagtttgtagaagactcaaatgtggat
gaaatatttgtacgttcatctattacctgtgagtctcgtcatggactttgtgctaaatgt
tatggtcgtgatctagctcgtggacatttagtcaacatgggtgaagctgtgggtgttatc
gctgctcagtcaattggtgagccaggaacgcagttaaccatgcggacattccatattggt
ggtgcggctagccgtagtgctgcgattgatagtgttcaagtaagaagtgctggtacagct
aaattacataacttgaaatatgtaattcgtgcagatggcgcattagtcgctgtctcacgt
tcaggtgagttagccattgctgatgagttcggacgtgagcgtgagcgctataaactacct
tatggtgccgtgattatgattaatgatggcgataaagttgaagcgggcgccgttattgct
aagtgggatccaagtacccatccaattatctctgaagttgaagggattgtttctttcgtt
ggtatggaagaaggtattacgatcaagcgtcaagcagatgagctaacaggtttaactaat
atcgaagtaatggatcaaaaagatcgtccagctgctgggaaagatattcgtccagccgtg
aagttactagatgctaaaggtaaagatcttttattaccaggaactgatgttcctgcccaa
tatttactacctgctaacgcattagtaagtttaactgatggtgcaaaaattggtgtgggt
gaggtcattgctcgtatccctaatgaaacggtcaaaacccgtgatattacagggggcttg
cctcgtgttgcagacttatttgaggcacgtcgcccaaaagaaccttcaattttggctgaa
attagtggaacaatttcttttggcaaagaaaccaaaggtaagcgtcgtttagtgattacg
cctgttgatggtggcgagccttatgaggagttaattcctaaatggcgtcatcttaacgtg
tttgagggtgagcaagtgagtcgtggggaagttatttctgacggtccaagcaacccgcat
gatattttacgtttattaggtgtttctgcgttagctaattatattgtccaagaaattcaa
gaagtttatcgtttacaaggtgtaaaaattaacgataagcacattgaaaccattttgcgt
caaatgttgcgtaaagtggaaattactgaatcgggagattcaagcttaattaaaggtgat
caagccgaattaacaaaagtacttgaagaaaatgaaatactggtcgctgcaaataaattt
acagcgaaatatgaacgtgttttattaggtattacaaaagcttcattatctactgagtca
tttatctctgctgcttcattccaagaaactacacgtgttcttacagaggctgctgtaaca
ggtaagagagattacttacgtggattgaaagagaacgtagttgtaggacgtttaatacct
gccggtacaggcttgacttaccataatgaacgtaaacaaaatcgtgacattgatactaac
caagtgacggctgatgaagtggaagcagctttaactgaagcacttaacttatcagaaagt
taa
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