Enterobacter mori: L6Y89_08235
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Entry
L6Y89_08235 CDS
T08239
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
emor
Enterobacter mori
Pathway
emor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L6Y89_08235 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emor03019
]
L6Y89_08235 (rne)
03009 Ribosome biogenesis [BR:
emor03009
]
L6Y89_08235 (rne)
Enzymes [BR:
emor01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
L6Y89_08235 (rne)
Messenger RNA biogenesis [BR:
emor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
L6Y89_08235 (rne)
Ribosome biogenesis [BR:
emor03009
]
Prokaryotic type
rRNA processing factors
L6Y89_08235 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
UKJ22947
LinkDB
All DBs
Position
complement(1750305..1753412)
Genome browser
AA seq
1035 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFTSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTKEVHAIVPVPVASYLLNEKRAAVSAIEARQGGVRCIIVPNDQMQ
TPHYHVLRVRKGEETTTLSYLLPKLHEEEMALPSDEEPAERKLPEQPALATFIMPEAPPE
AVLEKPAAKPAAQKPAPDVAKAQPEQPGLLSRFFGALKKMFAGEEVQPEQPKEAPKEAKP
ERQQDRRKRQNNRRDRNDRSDRNERRDNRSDNNEGREQREDNRRNRREKQQQNVEDREIR
QPTGDESEKSKQRDEQQPRRERNRRRNDEKRQAQQEVKNLNRGEPVEQQDAEQEERTQVM
PRRKQRQLNQKVRFASETTEETTVVTETVAESAPQTQLAKVDLPAVVENNAEQDDNGEGR
DNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLAIACASPEMASGKVWIRYPVA
RPEQIVEEQSVTEEVIAPVAATEEVVAAAATVVEPQAVEAEAPQAVEVETTHPEVIAAPV
DAAPQFIAEEDTVVAEEVAEEVEVAAPVEETADAVIETVTEEVVQEVELDVEPVREAEEA
PAPEVKPEPVVTVPVAAHVATAPMTRAPAPEYVPEAPRQSDWVRPEFNFDGKGSAGGHSA
THQATAPATRPQSVE
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcaacaagaagagttgcgtgtcgcccttgtggat
gggcagcgcctgtacgatctggatatcgaaagtcctggacacgaacagaaaaaagcgaac
atttacaaaggtaaaatcacccgcattgaaccaagccttgaagctgcatttgtcgattac
ggtgctgagcgtcacggtttcctccctcttaaagaaatcgcccgcgaatatttccctgca
aactacaacgcccatggccgcccaaacatcaaagatgtcctgcgtgaaggtcaggaagtt
atcgttcagattgataaagaagagcgtggcaacaaaggtgccgcactgacgacctttatc
agcctggcggggagctatctggttctgatgccaaacaacccgcgtgcgggtggtatctct
cgccgtatcgaaggtgatgaccgtaccgagctgaaagaagcgctggcaagtcttgaactg
ccggacggcatggggcttatcgtgcgtaccgcaggcgtaggcaaatctgccgaagcgctg
cagtgggacttaagcttccgtctgaagcactgggaagctatccagaaagcagcagaaagc
cgccctgctccgttcctgatccaccaggaaagcaacgttatcgtgcgtgccttccgtgat
tacctgcgtcaggacatcggcgaaattctgattgataacccgaaagtgcttgagctggct
cgccagcacatcgccgcgctgggtcgtccggatttcaccagcaaaatcaaactgtacacc
ggtgaaatcccgctgttcagccactatcagattgaatcccagattgaatccgccttccag
cgtgaagtgcgtctgccatccggtggttcaatcgttatcgatacgaccgaagcgctgacc
gctatcgacatcaactccgcgcgtgcaacccgcggcggtgatatcgaagagaccgccttc
aacaccaaccttgaagccgctgatgaaatcgcccgccagctccgcctgcgtgacctgggt
ggtctgatcgttatcgacttcatcgacatgacccctgttcgtcaccagcgtgcggttgaa
aaccgtctgcgcgaagcggtgcgccaggaccgtgctcgtatccagatcagccatatttct
cgctttggcctgctggaaatgtcccgtcagcgtctgagcccatcactgggtgagtccagc
catcacgtttgcccgcgctgttccggtaccggtaccgtgcgtgataacgaatcgctgtcc
ctctctattctgcgtctgattgaagaagaagcgctgaaagagaacactaaagaagttcac
gccattgtgccggtgcccgttgcctcttacctgcttaacgaaaaacgtgcagcggtaagc
gcaatcgaagcacgtcagggcggcgttcgctgcatcatcgtgccaaacgaccagatgcag
actccgcactatcacgtgctgcgtgtccgtaagggcgaagagacgaccaccctcagctac
ctgctgccgaagctgcatgaagaagagatggcactgccatccgatgaagagcctgccgag
cgtaaattgcctgagcagcctgcattagccaccttcattatgccggaagcaccgccagaa
gccgtgctggaaaaaccagcggctaaacctgctgcgcaaaaacctgcgccagacgtggcg
aaagcccagccagagcaacctggccttctgagccgcttcttcggcgcgctgaagaagatg
tttgctggcgaagaagttcagccggagcagccaaaagaagcaccaaaagaagcgaagcct
gagcgtcagcaggatcgtcgtaagcgccagaacaaccgccgcgatcgtaatgaccgcagc
gaccgtaacgagcgtcgcgacaaccgttctgacaacaacgaaggccgtgagcaacgcgaa
gataaccgtcgcaaccgtcgcgagaaacagcagcagaatgttgaagatcgcgaaattcgc
caaccgactggcgatgagtccgagaagagcaaacagcgcgacgagcagcagcctcgccgt
gagcgcaatcgtcgtcgcaacgacgagaagcgtcaggcgcagcaggaagttaaaaacctg
aaccgcggagagcctgttgaacagcaagacgctgagcaggaagaacgtactcaggttatg
ccgcgtcgtaagcagcgtcagttgaatcagaaagtccgttttgcttctgaaacgaccgaa
gagacaacggttgttacggaaaccgtcgccgaaagcgcgccgcagacccaactggcgaaa
gttgatctgccagcagtggtagagaacaacgccgagcaggatgataacggcgaaggtcgt
gataacgcaggcatgccgcgtcgttcacgtcgttctcctcgtcacctgcgcgtaagcggt
cagcgtcgtcgccgttatcgtgacgagcgttacccaactcagtctccaatgccgttagct
atcgcgtgtgcgtcacctgaaatggcatccggtaaagtctggatccgctacccggttgct
cgcccggagcagattgttgaagaacagtctgtcaccgaagaggtgattgcacctgtagct
gcaactgaagaagttgtggcggcagcagcgacggtggttgagccgcaggctgtggaagct
gaagctccacaggcggttgaagtggaaaccacccatcctgaagtgattgctgccccggtt
gatgccgcaccgcagttcatcgccgaagaagacacggtcgtggccgaagaggttgctgaa
gaagttgaagtcgccgcgccggttgaagagaccgctgacgctgttatcgaaacggtgaca
gaagaggtggttcaggaggttgaactcgacgttgaaccggttcgtgaagccgaagaagct
ccagcgcctgaggtgaaaccagagccagtggttactgtgccagtggcagcacacgttgca
acggcacccatgactcgcgcacctgcgcctgagtatgtgccggaagcaccgcgtcaaagc
gactgggttcgcccggagttcaactttgacggcaaaggttccgcaggtggtcacagcgca
acgcaccaggcgactgcaccggcaacccgcccccagtctgttgagtaa
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