Endozoicomonas montiporae: EZMO1_2989
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Entry
EZMO1_2989 CDS
T09822
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
emp
Endozoicomonas montiporae
Pathway
emp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EZMO1_2989 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emp03019
]
EZMO1_2989 (rne)
03009 Ribosome biogenesis [BR:
emp03009
]
EZMO1_2989 (rne)
Enzymes [BR:
emp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EZMO1_2989 (rne)
Messenger RNA biogenesis [BR:
emp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EZMO1_2989 (rne)
Ribosome biogenesis [BR:
emp03009
]
Prokaryotic type
rRNA processing factors
EZMO1_2989 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMO57024
UniProt:
A0A142BE48
LinkDB
All DBs
Position
3308873..3311983
Genome browser
AA seq
1036 aa
AA seq
DB search
MLINATQSEELRVALVDGQRLYDLDIESGAREQKKANIYKGKITRVEPSLEAAFVDFGAE
RHGFLPLKEISREYFSASYSGGRPSIKDVIKEGQEVIIQVDKEERGNKGAALTTLVSLAG
RYLVLMPNNPRAGGISRRIEGDERAELRETLSQLNIPAEMGVIVRTAGLGRSQEELQWDL
DYLLQLWSSIKEAAEQPAPLLIYQESNVIIRAIRDYLRQDIGEVLIDRQSVYDEAVTFIK
QVMPQYEHKIKLYKDSIPLFNRFQIESQIETAFQREVRLPSGGSIVIDPTEALVSIDINS
ARATRGGDIEETALNTNLEAADEIARQLRLRDIGGLIVIDFIDMSHNRNQREVENRIRQA
LSMDRARVQTGRISRFGLLEMSRQRLRPSLGETSGVVCPRCSGQGTIRDIESLALSILRL
MEEEAMKDKTSEIRAQVPVPVAAFLLNEKRSAIAKIEKRHQARVIVIPNANLDTPHYDVQ
RLRDDHVAEHVESSYEILEAEETAEQVVSASKPAPRQEAAVKTVAPAQPAPVKQEKPGLI
RSFVKALGGLFGNEEEQKQPESRQKPQSSSRSQREHQQPQRKQRSHRDNRDNREARESRA
HESRDNRDNRREQNDDQRQNRNDRRRGRQDRNESRHDARSDSRNDSRTDSRNESRNEQSD
NRQQRQQRQKQDRQEGRNSRQKQERFDRDDQSSRNQAAHSENRHENRNEGRADTRRNDNL
NQDTEQQGEDNRRRRRPGSAQRRRSNRPTQRDRNVQDQPTLPSLSKPQEQKLPEPEQQKP
AAQESGQAPAAKAEAPKERKPASQAKPAVEAPAPVEAKTAEKAEQPKPELQAPVEETKTD
KPVLAEPAAKPAAPVANSEATMQAPIEVAKPAEQEPRMTEMAKAVAASHQPTIPVESAPV
TTSVEFSQPEAKQDQTFNEAVEQLQNALTQLTEQPEEAPAKKVENTGVATEQQTAIEQQA
KKPVIEEPATVEQETTTASSEASETQESHSESQRPARRRRRSRALNDPRLKRKQQAEEAS
AEAARPADSQQTEASQ
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atgttaatcaacgcaactcaatcggaagagttgcgtgttgcactggtagacggacaacgc
ctgtatgatctggatatagaatcaggcgcccgcgaacagaaaaaggccaacatctacaaa
ggcaaaatcacccgtgtcgagccgagcctcgaagctgcctttgttgactttggcgcagaa
cgccacggcttcctgccactgaaagaaatctcccgcgagtatttcagcgcttcttactcc
ggtggccgtccgagcattaaggacgtcatcaaggaaggtcaggaagtgatcattcaggtt
gacaaggaagagcgtggcaacaaaggcgcggccctgacaacactggtcagccttgctggt
cgctaccttgttctgatgcctaacaaccctcgcgctggcggcatctcccgtcgtattgaa
ggtgacgagcgcgcagaactgcgtgaaaccctgagccagctgaatattcctgctgaaatg
ggcgtcattgttcgcaccgccggactgggtcgcagtcaggaagaactgcaatgggatctg
gactacctgttacagctctggagctctatcaaagaagccgctgaacagcctgcaccgctg
ctgatctatcaggaaagcaacgttatcatccgtgccatccgcgattacctgcgtcaggac
atcggtgaagttctgatcgacaggcagtctgtctacgacgaagccgtgacctttatcaag
caggtcatgccccagtatgagcataagatcaagctctacaaggacagcatcccactgttc
aaccgcttccagatcgagtcccagattgaaactgcgttccagcgtgaagtgcgtcttcct
tccggtggttccattgtcatcgacccgactgaagccctggtctctatcgacatcaactcc
gcccgtgcaacccgtggtggtgacatcgaagaaaccgcactgaataccaacctcgaagcg
gctgacgaaattgcccgccaactgcgcctgcgcgacattggtggcctgatcgtgatcgat
ttcatcgacatgagccacaaccgcaaccagcgcgaggtcgagaaccgtattcgtcaggct
ctgtccatggaccgcgcccgcgttcagacaggtcgtatctcacgttttggtctgctggaa
atgtcccgtcagcgcctgcgtccttctctgggagaaaccagcggcgttgtctgccctcgc
tgttctggtcagggcaccattcgcgacatcgaatccctggcactctccatcctgcgtctg
atggaagaagaggccatgaaggacaagacctccgaaatccgggctcaggtgccggtaccg
gtggctgccttcctgctgaacgaaaaacgttctgctattgccaagatcgaaaagcgtcat
caggctcgcgtcattgtgattcctaacgctaacctggacaccccgcactacgacgttcaa
cgtctgcgtgatgaccatgttgccgagcatgtagaaagcagctacgaaattctggaagcg
gaagaaactgcagagcaggttgtctctgcaagcaaacctgcacctcgtcaggaagcggct
gtgaagaccgtcgcaccggctcagccagcgcccgtcaagcaggaaaagcccggcctgatt
cgctcttttgtaaaagctctgggcggtctgtttggtaacgaagaagaacaaaaacagcct
gagagccgtcaaaagcctcagtcttcttcccgttctcaacgcgagcatcaacagccacag
cgcaaacaacgcagtcatcgcgacaacagggacaatcgtgaagcccgcgagagccgagca
cacgaaagccgtgacaacagagacaaccgtcgcgaacagaacgatgatcagcgtcagaac
cgcaatgatcgtcgtcgtggccgtcaggatcgtaatgaatcacgtcatgatgcccgcagc
gattcacgcaatgactctcgtactgattcccgtaacgagtcccgtaacgagcaaagcgac
aatcgccagcagcgccaacagcgccagaaacaggatcgtcaggaaggccgtaacagccgc
cagaagcaggaacgctttgatcgcgacgatcaatcttctcgcaaccaagctgcccatagc
gagaatcgtcacgaaaatcgcaacgaaggacgcgccgacacccgcagaaatgacaatctg
aatcaggacaccgaacaacagggtgaagacaaccgtcgtcgtcgccgtccgggttctgcc
cagcgtcgccgcagcaaccgtccaacccagcgcgatcgcaacgttcaggatcaaccaact
ctgccatccctgtccaagccacaggagcaaaaactgccagaacctgaacagcaaaagccg
gctgcccaggaatccggacaggctccggcggcaaaggctgaagctccgaaagagcgcaaa
cctgcttctcaagcaaaaccagcagtcgaagcacctgctccagtagaagcaaagactgct
gaaaaagctgagcagccaaagccagaattacaggcacctgtagaagaaaccaaaacggat
aagccggtactggccgaaccagctgccaagcctgctgcgccagtagctaattccgaagct
actatgcaggcaccgattgaagtggcaaaaccagcagaacaggaaccacgaatgactgaa
atggcaaaagccgttgcagccagtcaccagccaacgattcctgtggaaagtgctcctgtt
accacttctgtagagttctctcagccagaagccaagcaagatcagaccttcaatgaagct
gtagaacagctgcagaatgctctgacccagctgactgagcagcctgaagaagctccggcc
aaaaaggtggaaaacacgggagtagctacagagcaacaaactgccattgagcagcaggcc
aaaaagcctgtgattgaagaaccggctactgttgaacaggagacgacgactgcttcctct
gaagcatcagagactcaggaaagccattcagaaagtcagcgacctgcgcgccgacgtcgc
cgcagccgtgcgcttaacgatccacgactgaagcgcaagcaacaggctgaagaagcttct
gctgaagcagcccggccagcagattcgcagcagaccgaagcgtctcaataa
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