Endozoicomonas montiporae: EZMO1_3565
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Entry
EZMO1_3565 CDS
T09822
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
emp
Endozoicomonas montiporae
Brite
KEGG Orthology (KO) [BR:
emp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emp03019
]
EZMO1_3565 (hrpA)
Enzymes [BR:
emp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
EZMO1_3565 (hrpA)
Messenger RNA biogenesis [BR:
emp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
EZMO1_3565 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
AAA_19
nSTAND3
nSTAND_NTPase5
NACHT
AAA_23
T2SSE
AAA_25
SRP54
ABC_tran
PhoH
Motif
Other DBs
NCBI-ProteinID:
AMO57546
UniProt:
A0A142BFM0
LinkDB
All DBs
Position
complement(3945993..3949883)
Genome browser
AA seq
1296 aa
AA seq
DB search
MSGKNELRSAIDQCMIRDRYLLRRQLQRLKRSDEPALKKLQDRIERSMSRAQARAAAIPA
VEYDDALPVVQRRDEIAKAIRDHQVVVIAGETGSGKTTQLPKICLEAGRGVHGLIGHTQP
RRLAARSVSSRIAEELKVPVGEQVGYQVRFTDHGNENTLVKLMTDGILLAEVQNDRFLNR
YDTIIIDEAHERSLNIDFLMGYLKHLLPKRPDLKVIITSATIDVERFSKHFNNAPVIEVS
GRTYPVDVNYRPLEDLELEGRDADQRLQQGILASLREIEDLERGSKGGRLSDVLVFLSGE
REIRETAKFLRDARLPHTEILPLYARLSAAEQNRIFQSHSGRRVILSTNVAETSLTVPGI
RYVIDPGTARISRYSVRSKVQRLPVEPVSQASANQRKGRCGRVAEGICFRLYSEEDFLSR
PEFTDAEILRTNLAAVILQMLRLGLGDIAAFPFVDSPDSKAINDGFKLLQELGAVNDGRR
MTRVGRQLSQLPVDPRLARMLIEADKNRALNELLIITSALAIQDPRERPAEKQQAADQRH
REHYHDDSDFMSFVQLWESYEEQRQELSQNQLRKYCKQQFLSFMRMREWRDLHRQLALAC
KDIGLKTNDDAASYGDVHKSLLAGLLSHLGNKDEEADYMGARNRRFYLFPASTLYKRKPK
WVMTAELVETSRLFARVNAKIEPQWIEPLAGHLVKRNYFEPHWEKKRSQVVAYEQVTLYG
LIIVGRRRVNYGAIDPVVSRELFIREALVEGHYQSKGAFQQHNLDLIGEVDELEAKSRRR
DIMVDPETLYAFYDERLPEGIHNGAGFEKWRSSAEKEQPQLLFLTKEYLMRHDADQVTEN
KYPDRLRWEGLELPLTYHFEPGAIDDGVTLTLPVQALRLLPKHRLDWLVPGMLYDKCVAL
VRALPKAVRKNFVPVPDYVRGAMEAMSICDEPLTEILGHHLHRMAGVRILEEHWNVDDLD
PHLRMNFRLIDENGKVLGQGRDLVKLKEKFGNQSQDSLRKLTDSSLEQEGLKDWSCGELP
QEITRKVGGLVLKTYPALVDQKNSVAVKLFEDQGMAANEHRKGLTRLFRFKLSNQLKFAL
GKMKSLAQVKLLTTGIVQARALEDDLQNFLIAEVFVRNPEEWPRNQEAFQALVDQRKGNL
VPFAEDIDKLLLEIFKTAHSVSKNLKGKISFDRAFSLADIKAHLGQLIYPGFMQDAGSEW
LRHYPRFLRGIELRQEKLPAQINKDRAWTEELTLLYQGWEKRREIHRKHKLMDEKLMLYR
WMLEEYRVSLFAQQLGTRFPVSAKRLRKLWEEVQDV
NT seq
3891 nt
NT seq
+upstream
nt +downstream
nt
gtgtccggtaaaaacgaactacgcagtgccattgaccagtgcatgatcagggatcgctat
ctcctgcggcggcagttgcagcgcctgaagcgcagcgatgagccagcactgaaaaagctg
caggatcgtatcgaacgctcaatgagccgcgctcaggcgcgggctgccgctattcctgcg
gtggaatacgatgatgcgcttccggtcgtgcagcgtcgtgatgaaattgccaaagccatt
cgtgatcatcaggtagtggtgattgccggtgaaaccggctcgggtaaaaccacccagtta
cccaaaatctgccttgaggcgggtcggggtgtgcacggcctgattggtcacacccagcca
cgacgactggcagcccggtcggtgtccagtcgtattgccgaagagttgaaagtgcctgta
ggtgagcaggtgggttatcaggtacgttttaccgaccacggcaatgaaaacaccctggtc
aaactgatgaccgacggtattctgctggctgaggttcagaatgaccgttttctgaatcgt
tacgacaccatcattatcgatgaggcgcacgaacgcagcctgaacatcgatttcctgatg
ggctacctgaagcatctgctacccaaacgccctgacctgaaggtgatcatcacttcggcg
accatcgacgttgaacgtttttcgaagcattttaataacgccccggtgattgaagtgtcg
ggtcgtacttatcccgttgatgtgaactatcggcctttggaagatctggaacttgaaggc
cgtgatgcggatcagcgtttacagcaaggcattctggcttccctgagagaaattgaagac
cttgagcgaggctctaaaggtggcaggctgagtgacgtgctggtgtttctcagcggtgaa
cgtgaaattcgtgaaacggcaaagtttctgcgtgatgcccgcctgccacacacagagatt
cttcccctctatgcccgtttgtcggcggcagaacagaaccgtatttttcagtcgcactcc
gggcgtcgtgtgattctttccacaaacgtcgcggaaacctctctgacggttcccggtatt
cgttatgtgattgatccgggtacggcgaggatcagccgttacagcgttcgctcaaaagta
cagcggctgcctgttgaaccggtttcccaggcatctgccaatcagcggaaaggccgctgt
ggtcgtgtggcagaaggtatttgtttccgactgtacagtgaagaagactttctttcacgc
cctgagtttaccgatgctgaaatcctgcgaaccaatctggcggcggttattttgcaaatg
ctgcgattggggctgggtgatattgctgctttcccgtttgtggattcgcctgactctaaa
gccattaacgacggttttaaattattgcaggagctgggggcggttaatgacggtcgtcgc
atgacccgtgttggacgacagctttcgcagctgccggttgacccgagactggcacgtatg
ctcattgaggctgataaaaaccgggcattgaatgaactgttgattatcaccagtgcgctg
gcgattcaggacccgagagaacgtccggcagagaaacagcaggcagcggatcagcgtcat
cgggaacattatcacgacgactcggactttatgagttttgttcagctctgggagagttac
gaagagcagcgtcaggaactgtcccagaatcagttgcgtaaatactgtaagcaacagttc
ttgtcgtttatgcgcatgcgcgaatggcgtgaccttcatcgtcagctggctttggcctgc
aaagatattgggctgaaaacaaacgatgacgcggccagctatggcgacgttcataagtcg
ctgctggccggtttgttgtctcatttgggtaacaaggatgaagaagcggattacatgggg
gcgagaaatcgtcgtttttatctgttcccggcttcaactctgtacaaacgcaaacccaaa
tgggtgatgacggcggaactggttgaaacgtcccgactgtttgcccgggtcaatgccaaa
attgaaccccagtggatcgagcctctggcgggtcatctggtgaagcggaattactttgag
ccgcactgggagaaaaagcgttctcaggtggtcgcttatgagcaggtgacactgtacggg
ttgattattgtcgggcgtcgtcgtgtgaactatggcgctatcgatccagtggtttcccga
gagttgtttattcgagaagcgttggttgaagggcattatcagtcaaagggtgctttccag
cagcataatctcgacctgatcggtgaggtggatgagctggaagccaaatcccgtcgtcgg
gatattatggtcgatccggaaaccctttatgcgttttacgatgaacgcctgccggaaggc
attcacaatggcgctggttttgagaagtggcgatcttccgctgagaaggagcagcctcag
ctgttgtttctgactaaagagtatctgatgcgtcacgatgcggatcaggtaactgagaac
aaatatccggatcgtttacgctgggaaggtctggaactgccgctgacgtatcattttgaa
ccgggcgctattgacgacggtgtgaccctgacgttgccggttcaggcattgcgtctgttg
cccaaacaccgccttgattggctggtgccgggtatgttgtacgacaagtgtgtagcgctg
gtacgggcgttgccaaaagcggttcggaagaactttgtgccagtgccggattatgttcgt
ggtgccatggaagccatgtcgatttgtgatgagccgttaaccgagattcttggtcatcat
ctgcatcgtatggcaggggttcgcattctggaagagcactggaatgtggatgatcttgac
ccgcatctgcgcatgaatttccgcctgattgatgagaatggcaaagtgttggggcaggga
cgcgatctggtcaaattaaaagaaaagtttggcaaccagtcgcaggacagcctgcgtaaa
ctgactgacagttctctggaacaggaaggtctgaaagactggagctgtggtgagctgcca
caggaaatcacgcgtaaagtcggcgggctggtgctgaaaacctacccggctctggtggat
cagaaaaacagtgtggcggtgaaactgtttgaagatcagggcatggcggcgaatgagcat
cgaaaaggattaacacgactgttccggttcaaactgtcaaaccagctgaagtttgcgctg
ggtaagatgaaaagtcttgctcaggtgaaactgctgaccaccggtattgttcaggcgagg
gcattagaggatgacctgcagaatttcctgattgctgaagtgtttgtccggaaccctgaa
gagtggccgagaaatcaggaggcttttcaggcactggtggatcagcgcaagggtaatctg
gtgccttttgctgaggacatcgacaaactattgctggagatttttaaaaccgctcactct
gtcagtaagaacctcaagggcaagatttcttttgatcgagcgttttctctggcggatatc
aaggcgcacctggggcaactgatttatcctggctttatgcaggatgcaggtagtgaatgg
ctgagacattatcctcgctttctgcggggaattgagcttcgtcaggaaaaattgccagcc
cagatcaataaagacagggcatggacggaagaactgaccctgctttatcagggctgggaa
aagcgtcgtgaaattcaccggaaacataaactgatggatgagaaattgatgctgtaccgc
tggatgctggaagagtatcgggtatcactgtttgcccagcagctgggaacccgttttcca
gtgtctgccaagcgactgcgtaaactctgggaagaggttcaggatgtttaa
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