Endozoicomonas montiporae: EZMO1_4262
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Entry
EZMO1_4262 CDS
T09822
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
emp
Endozoicomonas montiporae
Pathway
emp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
emp00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
EZMO1_4262 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emp03021
]
EZMO1_4262 (rpoD)
Transcription machinery [BR:
emp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
EZMO1_4262 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF1615
TMPIT
HAUS-augmin3
Motif
Other DBs
NCBI-ProteinID:
AMO58184
UniProt:
A0A142BHF8
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Position
4698188..4700020
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AA seq
610 aa
AA seq
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MSANSQQQSRLKELISRGKEQGYLTYAEVNDHLPEDISDPDQVEDIIRMINDMGITVYET
APDADTLLMAEAETDEAAVEEAAAALAAVEQEAGRTTDPVRMYMREMGTVELLTREGEIQ
IAKRIEEGLREVMSALSQFPGSVQIVLDEYDRINEEEGRLTDLISGYIDPDSDVTPPPAA
PIPSVEEMQEDFDDDENEDDEDDEEPGGLDPEEARERFEALQVKHEQMINVLAEHERGTQ
AAKQALTELAEPFMPLKLVPRIFDMLVFRIRNTLENIRSNERAIMQLCVRRSKMPRKIFL
KTFPGNETNLEWVEQITAGSAAYSENIIAYRDEIIRAQKKLASIEKDYGITLNQIKDINR
KMSLGEARARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRR
GYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEEL
AVRMEMPEDKIRKVLKISKEPISMETPIGDDEDSHLGDFIEDATIQSPIDRATGSGLKES
TRQVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTR
SDHLRSFLDE
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atgtcagctaattcgcaacaacaatcccgactgaaagagcttatctctcgcggtaaggaa
cagggctacctgacttatgcagaggtaaacgaccatctgccggaagacatttctgatccg
gatcaggtcgaagacatcatccgcatgattaacgacatgggtattacggtctacgaaaca
gcgccggacgccgataccctgttgatggcagaagccgaaactgacgaagcggccgtagaa
gaagcagcggctgctcttgctgctgtggagcaggaagctggtcgaaccaccgacccggta
cgtatgtacatgcgtgaaatgggtactgtagaacttctcacccgtgaaggcgaaatccag
atcgccaagcgtattgaagaaggtctgcgcgaagtcatgtcggctctgtctcagttcccg
ggttccgtacaaatcgttcttgatgaatacgatcgcatcaacgaagaagaaggtcgcctg
accgacctgatcagtggctacatcgaccctgattccgacgtgacgccaccaccggcagca
ccgattcccagcgttgaagaaatgcaggaagacttcgacgatgatgaaaacgaagatgac
gaggacgatgaagaaccgggcggtctggacccggaagaagcccgcgaacgctttgaagca
ttgcaggtcaagcatgagcagatgatcaacgttctggccgagcatgaacgtggcacacaa
gctgcgaagcaggctctgaccgagctggctgaaccgttcatgccactgaagctggttccg
cgtatattcgacatgctggtgttccgcattcgcaacacgctggaaaacatccgcagcaat
gaacgcgccatcatgcaattgtgtgtacgccgttccaaaatgccgcgcaagatcttcctg
aagaccttccctggtaacgaaaccaatctggaatgggttgagcagatcactgccggcagc
gccgcttactcagaaaacatcatagcctatcgcgatgaaatcattcgcgcccagaaaaaa
ctggcttcgatcgagaaggattacggcatcacgcttaaccagatcaaagacatcaaccgc
aagatgtctctgggtgaagcccgcgcccgtcgcgccaagaaagagatggttgaggccaac
ctgcgtctggtgatttctattgccaagaaatacaccaaccgtggcctgcaattcctggac
ctgattcaggaaggtaacatcggcctgatgaaagccgtagacaagttcgaataccgtcgt
ggttacaagttctccacgtacgctacctggtggattcgccaggcgatcacccgctctatt
gccgaccaggctcgtacgatccgtattccggtacacatgatcgagaccatcaacaaactg
aaccgcatctcccgtcagatgcttcaggaaatgggtcgcgaaccaacgccggaagaactg
gccgtgcgcatggaaatgccggaagacaagatccgcaaggttctgaagatttccaaagag
cctatttccatggaaacgccgattggtgacgatgaagattcccacctgggtgactttatc
gaagatgcgaccatccagtcgcccatcgatcgagctacaggttccggcctgaaagagtct
acccgccaggtactctccgggctgactgcccgtgaggcaaaagtcctgcgtatgcgtttc
ggtatcgacatgaacaccgaccacactctggaagaagtgggtaagcagttcgacgttacc
cgcgaacgtatccgtcagatcgaagccaaggctctgcgcaagctgcgccatcctacccgc
tccgatcacctgcgcagcttcctggacgaataa
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