Endozoicomonas montiporae: EZMO1_4596
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Entry
EZMO1_4596 CDS
T09822
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
emp
Endozoicomonas montiporae
Pathway
emp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
emp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EZMO1_4596 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emp03021
]
EZMO1_4596 (rpoC)
03400 DNA repair and recombination proteins [BR:
emp03400
]
EZMO1_4596 (rpoC)
Enzymes [BR:
emp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EZMO1_4596 (rpoC)
Transcription machinery [BR:
emp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EZMO1_4596 (rpoC)
DNA repair and recombination proteins [BR:
emp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EZMO1_4596 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
RnfC_N
CopK
Motif
Other DBs
NCBI-ProteinID:
AMO58507
UniProt:
A0A142BID1
LinkDB
All DBs
Position
complement(5044818..5049029)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKDLLNLLKTQGQTDEFDSIRIGLASPEMVRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVVDPGMTTLEKNQLLSDEQYYEALEEFGDDFDARM
GAEAIKALLNDIDLGEEVEMLREEIPQTNSETKLKKLSKRLKLVEAFHKSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEAKGLATTIKAAKKMVERETPEVWDVLADVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILAPANGEPIIVPSQDVVLGLYYITRERINAKGEGMAFVDIREVMRAYRTG
AVELHARVKVRVSEKYKDDDGVEHDRTFLADTTVGRMILWEIVPEGLPFSLVNQTMKKKA
ISGLLNASYRRVGLKETVIFADQMLYLGFNYATLSGASIGVNDFVIPDNKKDIIRDANEE
VREIENQFASGLVTAGEKYNKVIDIWSRANEMLAKSMMDNLKSDTVLNKQGEEEEQESFN
SVYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTTNGLMMTPHIEGGDVVEPLGERIL
GRVVALDVFKPGSEDEIAIPAGTLIDEAWVKRLEGMNVDEMKVRSPISCDTRHGICAKCY
GRDLGRGHLVNKGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRNAAQDNITVKNKGVAR
LLNMKSVERKDGTLVSVSRSGQLAIADEFGRERERYKLPYGAVVSVKEDDEVSSGQVVAK
WDPHTHPIVTELSGTVKFLGFEEGITVKTQTDELTGLSNIEVMDPKDRPSAGKDIRPAIQ
LLDANGKELKLPNTDVPAQYFLPANALVNLADGATVEVGDIVARIPQQSGGNKDITGGLP
RVADLFEARKPKEHSILAEITGTIGFGKETKGKKRLVITPNDGSDPYEELIPKWRNLNVF
EGEQVTKGEVISDGPTNPHDVLRLLGVGELARYIVNEIQDVYRLQGVKINDKHIETILRQ
MLRKVEITDTGDSTLIRGDQTEYTTVLEENDRLGAEDKFPAKFDRVLLGITKASLATESF
ISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHAERKKGREEPEFE
APVKVSASDVEAALSEALNFGEV
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttgctgaatctactcaagacccagggccaaactgacgagtttgactctatt
cgtatcggtctggcttccccagagatggtacgttcctggtcttacggcgaagttaaaaag
ccggaaaccattaattaccgtacgttcaaacctgaacgtgacggcctgttctgtgccaaa
atttttggcccagtgaaagattacgagtgcctgtgcggtaagtacaagcgcctgaagcac
cgtggtgttatctgtgaaaagtgtggcgtagaagttgcactggctaaagtgcgtcgtgac
cgtatgggtcacatcgaactggccagcccggtggctcacatctggttcctgaagtccctt
ccatcccgtatcggtttgctgctggacatgaccctgcgcgatatcgaacgtgtactctac
tttgagtcctacgtggtggttgatccgggtatgacaacactggaaaagaaccagctgctg
tctgacgaacaatattatgaagccctcgaagagttcggcgacgactttgacgcccgcatg
ggtgcggaagcgatcaaggctctgctgaacgatatcgatctgggtgaagaagtggaaatg
ctgcgtgaagaaattccgcagaccaactctgaaaccaaactgaagaagctgtccaagcgt
ctgaagctggttgaagcgttccacaaatccggtaacaacccggaatggatgattctgacc
gttctgccggttctgccgccagatctgcgtcctctggtacctctggatggcggtcgtttt
gcgacgtctgacctgaacgacctgtaccgtcgagtgatcaaccgtaacaaccgtctgaag
cgtctgctcgacctgaacgcgcctgacatcattgtccgcaacgaaaagcgtatgctgcag
gaatctgtagacgcgctgctggacaacggtcgtcgtggtcgtgccatcaccggttctaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcagggtcgtttccgtcag
aacctgctgggtaagcgagttgactactccggtcgttccgtaattaccgtaggtcctacc
ctgcgtctgcaccagtgtggtcttcccaagaagatggctctggaactgttcaagccgttc
atcttcggtaagctggaagccaaaggtctggcgaccaccattaaagctgccaagaagatg
gtagaacgcgaaacaccggaagtatgggacgtactggctgatgtcatccgtgaacatccg
gtaatgctgaaccgtgcaccaaccctgcaccgtctcggtattcaggcgttcgaaccggtt
ctgatcgaaggtaaagcgattcaactgcacccgctggtgtgtgcggcgtacaacgctgac
ttcgacggtgaccagatggcggtacacgtacctctgactctggaagcccagctggaagcc
cgtgccctgatgatgtccaccaacaacatcctggctcctgcaaacggcgaaccaattatc
gtaccttcccaggacgttgtactgggtctgtactacatcacccgtgagcgtatcaacgcc
aagggtgaaggcatggcattcgtggacatccgcgaagtaatgcgcgcttaccgtactggc
gctgttgagctgcacgctcgcgttaaagtacgtgtcagcgaaaaatacaaagacgacgat
ggtgtagaacacgatcgtaccttcctggctgacaccactgtgggtcgtatgattctttgg
gaaatcgttcctgaaggtctgccattctcactggtaaaccagaccatgaagaagaaggct
atttccggcctgctgaatgcgagctatcgtcgtgttggtctgaaagaaaccgttatcttt
gctgaccagatgctgtacctcggcttcaactacgcgactctgtctggcgcgtctatcggt
gtgaacgactttgttatcccggataacaagaaggacattatccgtgacgctaacgaagaa
gtgcgcgagatcgaaaaccagtttgcttccggtctggtaactgcaggcgagaagtacaac
aaggttatcgatatctggtcccgtgccaacgaaatgctggccaagtccatgatggacaac
ctgaagtccgacaccgttctgaacaagcagggcgaagaggaagagcaggaatccttcaac
agcgtttacatgatggccgactccggtgctcgtggtagtgccgcacagattcgtcagctg
gcgggtatgcgtggtctgatggccaagccagacggctccatcatagaaacgccaattacc
gcgaacttccgtgaaggtctgaacgtactgcagtacttcatctctactcacggtgctcgt
aaaggtctggcggataccgctctgaagaccgcgaactccggttacctgacccgtcgtctg
gtagacgttgcgcaggatctggtggtgaccgaagacgactgtggtaccaccaacggtctg
atgatgacaccgcacattgaaggcggtgacgtggttgagcctctgggtgagcgtattctg
ggtcgtgttgtggctctggacgtattcaaaccaggctccgaagacgagatcgctattcca
gcgggtaccctgatcgacgaagcatgggttaaacgtctggaaggcatgaacgtcgatgaa
atgaaagtacgttctccaatcagctgtgacacacgccacggtatctgtgcgaaatgttat
ggtcgagacctgggtcgcggacatctggttaacaagggtgaggctgttggtgttatcgct
gctcagtccatcggtgaaccgggtacacagctgaccatgcgtaccttccacatcggtggt
gctgcgtctcgtaacgctgctcaggacaacattactgttaagaacaagggtgttgctcgt
ctgctcaacatgaagtctgttgagcgcaaagacggcaccttggtgtctgtcagccgttcc
ggtcagctggcgattgccgacgaatttggtcgtgagcgtgagcgttacaagctgccttac
ggtgcggttgtttctgttaaggaagatgatgaagtgtcttccggtcaggtagttgcgaag
tgggatccacacacgcacccaatcgtgaccgaactgtccggtactgttaagttcctgggc
ttcgaagaaggcattaccgttaagacccagactgatgagctgactggtctgtccaacatt
gaagtgatggatccgaaggatcgtccttctgcgggcaaggacattcgtcctgctattcag
ctgctggatgccaacggtaaggaactgaaactgccgaacactgacgtgcctgcgcagtac
ttcctgccagcaaacgctctggtgaacctggccgacggcgcgactgtagaagtgggtgac
atcgttgctcgtattccacagcagtccggcggtaacaaggacatcaccggtggtctgcca
cgagtggccgacctgtttgaagcgcgtaagccgaaagaacactctatcctggctgaaatt
accggtaccatcggcttcggtaaggaaaccaagggtaagaagcgtctggtcatcactccg
aacgacggtagcgatccgtacgaggagctgattcctaaatggcgtaacctgaacgtgttc
gaaggtgagcaggtaaccaaaggtgaggtaatctccgacggtcctaccaatccgcacgac
gttctgcgtctgctgggtgtgggtgagctggctcgctatatcgttaatgaaatccaggac
gtataccgtctgcagggtgtaaaaattaacgataagcacatcgagaccattctgcgtcag
atgctgcgtaaggtagaaatcaccgataccggtgactctactctgattcgcggtgatcag
actgagtacactaccgttctggaagagaacgatcgtctgggtgcggaagacaagttccct
gccaagttcgaccgtgtactgctgggtattaccaaagcgtctctggcaacagagtccttc
atctctgcggcttccttccaggaaaccacacgagttctaactgaagctgcggtaaccggt
aaacgtgactacctgcgcggtctgaaggaaaacgtggtcgttggtcgtctgattccggcg
ggtacgggtcttgcttaccacgctgagcgtaagaagggtcgtgaagagccagagttcgaa
gcaccggttaaggtgtctgcttctgatgtggaagctgctctgtctgaagcgcttaacttc
ggcgaagtgtga
DBGET
integrated database retrieval system
