Emydura macquarii macquarii (eastern short-necked turtle): 137140957
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Entry
137140957 CDS
T11697
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
KO
K19719
collagen type II alpha
Organism
emq Emydura macquarii macquarii (eastern short-necked turtle)
Pathway
emq04510
Focal adhesion
emq04512
ECM-receptor interaction
emq04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
emq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137140957 (COL2A1)
04518 Integrin signaling
137140957 (COL2A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137140957 (COL2A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
emq00536
]
137140957 (COL2A1)
Glycosaminoglycan binding proteins [BR:
emq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137140957 (COL2A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
137140957
NCBI-ProteinID:
XP_067385811
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVVLLAAAHLILLAVVRCQDEDIQEAGSCVQDGQRYSDKDVWKPEPCRICVC
DTGTILCDEIICEEMRDCLNPEIPFGECCPVCPTDQPAPSGQPGPKGQKGEPGDIKDVVG
PRGPPGPQGPSGEQGPRGDRGDKGEKGVPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGG
NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEPGEPGTSG
PMGPRGPPGPPGKPGDDGEAGKPGKSGERGSPGPQGARGFPGTPGLPGVKGHRGYPGLDG
SKGEAGAAGAKGEAGSPGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPG
PVGPSGAPGFPGGPGSKGEAGPTGARGPEGPQGPRGESGTPGSPGPAGASGNPGTDGIPG
AKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGDPGIAGFKGEQGPKGESGPAG
PQGAPGPAGEEGKRGSRGEPGGAGPIGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPAG
LGGPKGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPTGAAGEDGRPGPPGPQGARG
QPGVMGFPGPKGANGEPGKAGEKGLAGAPGLRGLPGKDGETGAAGPPGPSGPVGERGEQG
SPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGTPGLVGPRGERGFPGERGSPGSQGLQG
PRGLPGTPGTDGPKGATGPGGPTGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEG
APGKDGGRGLTGPIGPPGPSGPNGEKGESGPPGPSGAAGARGAPGDRGETGAPGPAGFAG
PPGADGQPGTKGEQGESGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPPGSAGKDGPKGARGDAGPTGRAGDPGLQGPAGPPGEKG
ESGEDGPSGPDGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDRG
PPGPVGPPGLTGPSGEPGREGTPGSDGPPGRDGAAGVKGDRGETGSVGSPGAPGPPGSPG
PVGPTGKQGDRGESGAQGPLGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTG
LQGLPGPPGQSGDQGATGPSGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGETG
PAGPPGNTGPPGPPGPPGPGIDMSAFAGLGQVEKGPDPMRYMRADQASSDLRQHDVEVDA
TLKSLNNQIESIRSPEGSKKNPARTCRDLKLCHPEWKSGDYWIDPNQGCTLDAIKVFCNM
ESGETCVYPSPSSIPKKNWWTSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANIQMTF
LRLLSTEGSQNITYHCKNSIAYMDEASGNLKKAILIQGSNDVEIRAEGNSRFTYSALEDG
CTKHTGKWSKTVIEYRSQKTSRLPIIDVAPMDIGGADQEFGVDIGPVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgtagtgctcctggcagcggcccacctcatttta
ttagcagttgtcagatgtcaggatgaggatatccaggaggcaggcagctgtgtgcaggat
gggcagaggtatagtgataaggatgtgtggaaacctgagccctgccggatctgtgtctgt
gacactgggactatcctctgcgacgagataatctgcgaagaaatgagagactgtctcaac
cctgagatccccttcggagaatgttgccctgtctgcccaactgaccaacctgctcccagc
gggcaacctggccccaagggacaaaaaggggaacctggtgatattaaagatgttgtagga
ccaagagggccacctggaccacagggaccatcaggggaacaaggaccaaggggcgaccgt
ggggataaaggagaaaaaggtgttcctggccctcggggtagagatggtgaacctggtacc
cctggaaaccccggacccccaggacccccgggtcccccagggccccctgggcttggtgga
aactttgctgctcagatggcgggaggatttgatgagaaggctggcggcgctcagttgggt
gtgatgcagggacctatgggacctatgggaccgcgaggacctccaggaccatcaggatct
cctggccctcaaggatttcaaggcaatcccggagaacctggtgaacctggaacttctggg
ccaatgggtccccgagggcctcccggaccacctggaaaacccggcgatgatggtgaagca
ggcaaacctggtaaatctggtgaacgtggatctcccggccctcagggtgctcgaggcttc
ccaggaactccaggtctcccaggagtcaaaggtcacagaggttacccggggttagatggc
tccaaaggagaagcgggagctgcaggtgctaagggcgaagctgggtctcctggtgagaat
ggttctcctggtcccatggggccccgtggcctcccaggtgaaagaggacgtcccggcccc
tccggtgctgctggtgctcgtggcaatgatggtctccccggccccgctggtcctcccgga
cccgtcggcccctctggagctcctggcttccctggtggcccagggtctaagggggaagct
ggccccactggcgctcgtggccctgagggtccccaaggccccagaggtgaatctggcact
cccggctcccctggacctgcaggggcatccggtaaccctggcacggatggcatccctggc
gctaaaggatcagctggcgctcccggaatcgctggtgcccccggcttccccggcccacgt
gggcctcccgggcctcaaggtgcaactggacctctcggtcccaaaggtcagacgggagac
cctggcattgccggtttcaaaggcgagcaaggtcccaaaggcgaatccggccctgcaggt
ccacaaggagcgcctggcccagccggcgaggaaggcaagagaggctcccgtggcgagccc
ggcggtgctggccctattggaccccctggagagagaggctctcctggaaaccgcggcttc
ccaggtcaggatggtctcgccggacccaagggtgcccctggcgagcgtggtcctgctggc
ctcgggggtcctaaaggagcctctggtgatcccggacgtcctggagaacctggtctgcct
ggcgctaggggtctcactgggcgcccaggtgatgctggtcctcaaggcaaagtcggtcct
actggcgccgctggcgaggacggtcgccccggcccgccaggcccacaaggtgctcgcggg
cagcctggcgtcatgggtttccccgggccaaaaggtgctaacggcgagcctggtaaggct
ggtgagaagggattggccggtgcccctggtctgagaggtcttcctggcaaagatggtgag
accggagctgccggccccccaggaccttccgggcctgtcggagagaggggtgagcagggg
tctccaggtccttctggcttccagggactccctggccccccaggtcctccaggggaaggt
ggcaagccaggagatcagggtgtccccggcgaagctggcaccccagggctcgttggtccc
agaggtgaacgtggcttcccaggcgaacgtggctctccaggttcacaaggtctgcagggc
ccgcgggggctccccggaactcctggtaccgatggacccaagggcgcgactggtccaggt
ggccctaccggtgcccaaggtccccccggtctgcaggggatgcccggcgagaggggagct
gctggtattgccggacccaagggagacaggggcgatgttggtgagaaaggcccggaagga
gctcctggcaaggacggcggcagaggtttgacaggtcccatcggtccccctggcccctcg
ggtcctaacggcgagaagggtgaatccggtccccccggcccatctggtgcggctggtgcc
cgcggtgccccgggtgaccgtggcgagactggagcccccggccctgctggatttgctgga
cctcccggtgcagacggccaaccaggcactaaaggtgaacaaggagaatctggccagaag
ggagatgctggggccccaggtccacagggtccttccggtgctcccggcccccagggtccc
actggtgtgactggtcctaagggagctcgtggtgctcagggaccccctggagccaccgga
ttccctggcgctgcaggacgtgtcggcccacccggccctaacggcaatccaggcccagct
ggccccccaggttccgctggcaaagatggtcccaagggtgcgcgtggtgacgcaggcccc
acgggccgtgctggcgaccctggtctccaaggccctgctggtccccctggtgagaaggga
gagtctggggaagatggcccatctggtcccgatggtcctcctggtcctcaaggattggca
ggccagcgaggtattgtcggtctccctggccagcgtggtgagagaggtttcccagggctg
cctggtccctcgggtgagcccggcaaacagggagcccctggaggtgccggagacagaggg
ccacctggtcctgtgggtcccccaggtctgactggaccctctggtgaaccagggcgcgag
ggcacccccggatccgatggtccccccggcagagatggtgcagctggagtgaagggggat
cgtggtgagactggttctgttgggtctcctggtgctcccggccctcctggctccccaggt
cctgttggtccaactggcaaacagggagacagaggagaatctggcgctcaaggtcccctg
ggtccctccggccccgccggcgcacgcggcatgccggggcctcaaggtcctcgcggtgac
aaaggtgaagctggagaggctggcgagagaggtctgaagggtcaccgaggattcactggt
ctgcaaggtcttccgggacctcccggtcaatctggagatcaaggtgctactggtccctct
ggtccttctggtcccaggggtcccccaggccccgttggcccctctggcaaagatggttca
aatggcatgcccggtccaattggtcctccgggtcctcggggtcgtagtggcgaaaccgga
cctgctggtccccctggaaacactggtccccctggacctcctggtcccccaggtcctggc
attgacatgtcggccttcgctggtctgggtcaggtagagaaaggccctgaccctatgcgc
tacatgcgagctgaccaggcttctagcgacctgcgccagcacgacgtcgaggtcgacgcc
actctgaaatccctcaacaatcagattgaaagcatccgtagccccgaaggctccaagaag
aacccagcccggacctgccgtgaccttaaactctgccaccctgaatggaagagcggtgac
tactggatcgaccctaaccagggctgtaccttggatgccattaaggttttctgtaacatg
gagagtggcgaaacatgtgtctaccccagcccatccagcattcccaaaaagaactggtgg
acgagcaagagcaaggagaagaagcatatctggtttggagagaccatcaacggcggcttc
cactttagctatggagatgacaacctggccccaaacactgccaacatccagatgaccttc
ctgcgccttctgtctaccgaaggctcccagaacatcacctaccactgcaagaacagcatt
gcctacatggacgaggcctccggcaacctgaagaaagccatcctgatacagggatccaat
gatgttgagatcagagccgagggcaacagcagattcacatacagtgccttggaggacggc
tgcacgaaacacactggtaaatggagcaagacggtcattgaataccggtcacagaagacc
tcgcgcctgcccatcattgatgtggcacctatggacattggtggagccgatcaggagttt
ggcgttgacattgggccagtctgcttcttgtaa
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integrated database retrieval system
