Emydura macquarii macquarii (eastern short-necked turtle): 137148342
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Entry
137148342 CDS
T11697
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
emq
Emydura macquarii macquarii (eastern short-necked turtle)
Pathway
emq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
emq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137148342 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
emq03041
]
137148342 (DDX42)
Enzymes [BR:
emq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
137148342 (DDX42)
Spliceosome [BR:
emq03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
137148342 (DDX42)
Complex B
137148342 (DDX42)
Complex C
U2 SnRNP specific factors
137148342 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4238
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
137148342
NCBI-ProteinID:
XP_067397122
LinkDB
All DBs
Position
Unknown
AA seq
957 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAIAPGKKEEPKLPQQSHSAFGAPGSSAAFGKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVDLPYIPAENSPTRQQFHSKSGDSDSEDDPLEAFM
AEVEDQAARDMKRLEDKDKERKNTKGIRDDIEEEDDQEAYFRYMAENPTAGVVPEEEEDN
LEYDSDGNPIAPSKKVIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLSPQQIVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQ
VRSVASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILPS
GPSKWTWLTRHLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISDFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGIAYT
LLTPKDSNFAGDLVRNMEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSDGSDRGNSSNVMSNYEAYKPSSGAMGDRLSAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTNSAQQNAAASPDSPIAAAAAVKGIPGFTSAGNLSSVP
SYPSVGIQGFNSTSASINSREGGVGGVVGVGVGGGGGGGGGGVGGGSRERYSENRSGRHG
DSQRHGDVGGRHGDSQRHGDGGGRHSDGYRHGDNRHGDSHRHSESRHSSGASNNNSRHGD
NRNNGDSRNMSDGRNNEGRNNESRIVENRKDGNSRDSKTDGFAVPEPPKRKKSRWDS
NT seq
2874 nt
NT seq
+upstream
nt +downstream
nt
atgaactggaataaaggtggacctggcaccaaaagaggctttgggtttggaggatttgcc
atagctcctggaaagaaagaagaaccaaagctccctcaacagtcccatagtgcttttgga
gcacctggctcttcagctgcgtttgggaagtcaggaccgcctcagctcccttcgttctac
aaaattggatcaaagcgagcaaactttgatgaggagaatgcatactttgaggatgaagag
gaagattccagcaatgttgatttgccatacattcctgcagagaattcccccactcgccag
cagtttcattccaaatcaggagactctgatagtgaagatgatcccttggaagcattcatg
gctgaagtggaggatcaagcagctcgagacatgaagagacttgaagacaaagacaaggaa
agaaagaatacaaagggtattcgcgatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggcagaaaaccctactgctggtgtggtgccagaagaagaagaggataac
ttggaatatgatagcgatgggaatccaattgcaccatccaaaaaagtcattgatcctctt
ccacctattgatcattcagagattgaatacccaccatttgagaagaacttctacgatgaa
catgaagaaatcaccagcctctccccacagcagatagtggaactacgacacaagttgaac
cttcgggtctctggagctgctccccccagacctggcagtagttttgctcattttggattt
gatgaacagcttatgcatcaaattcggaaatctgaatatacccagcccactcctatacaa
tgccagggtgttccagttgcattgagtggcagagacatgattggcatagctaagactggc
agtgggaaaactgcagctttcatctggccgatgttgatccacatcatggatcaaaaggag
ctggagccaggggatggtcccattgcagtgattgtgtgcccaaccagagagctttgccaa
cagatccatgctgaatgtaaacgctttggtaaagcgtataacttgcgctcagtagcagtg
tatggaggaggaagtatgtgggaacaagccaaagctctgcaggaaggagcagagatagtt
gtctgcaccccaggtcgattgattgatcatgtgaagaagaaagctaccaatcttcaaaga
gtctcttatcttgtgtttgatgaagcagacagaatgtttgacatgggtttcgaataccag
gtcagatcagttgccagccatgtgcgccctgacagacaaactctcttgttcagtgccact
tttcgtaaaaagattgagaaattggccagagatatcctgatcgacccgattcgagtggtg
cagggagacattggagaggcaaatgaagatgtgactcagattgtggagattctcccctct
ggccctagcaagtggacctggctgaccaggcatctggtggagttcacttcttctgggagt
gttctcctctttgtcaccaagaaagcgaatgcagaggagctggccaataacctcaagcag
gaggatcataatctaggactgcttcatggtgacatggaccagagtgaaaggaataaagtc
atttcagactttaagaaaaaggggatcccaattctagtggctacagatgtggcagctcgt
ggtctggatattccttccattaagactgtgatcaattatgatgtggctcgtgacatagat
acccacacacacagaattggacgtactggcagagctggcgagaagggaatagcgtacact
ttactgactcccaaggacagcaattttgctggtgatcttgtcagaaatatggaaggagcc
aatcaacatgtttcaaaagaactcttggatcttgcaatgcagaacgcctggttccggaaa
tcccgtttcaagggagggaaaggcaagaagctgaacatcggtggtggtggcttgggatac
cgcgagcgccctggcctgggctcggatggctctgaccgcgggaacagcagcaacgtgatg
agtaactatgaggcctacaagccatccagtggggcaatgggagacagactgtctgcaatg
aaagcagcgtttcagtcacaatacaagagccactttgttgctgccagcttaaacaaccaa
aagactggtagctctgctgctggggctagtggatggaccagcgctgggagcttgaattca
gtaccaacaaattcagcgcagcagaatgctgctgcaagtcctgacagtccaattgctgct
gctgctgcagtaaaggggatcccgggtttcaccagcgccggcaacctgagcagtgttcct
agctatccaagtgttggaattcagggattcaatagcacgagtgctagcatcaacagccga
gaaggtggcgttggtggtgttgttggcgttggcgttggtggaggcggaggtggaggtgga
ggcggtgttggcggcggcagcagagaaagatacagtgagaaccgaagcggtcgccatggt
gacagtcagcgccatggagatgttggtggtcgccatggtgacagtcagcgtcatggagat
ggtgggggtcgccacagcgatggctaccgccatggagacaaccgccacggggacagccac
cgccacagtgaaagccgccattctagtggtgcaagcaacaacaatagccgacatggtgac
aaccgcaataatggtgacagccgcaatatgagtgatggtaggaacaacgagggtagaaac
aacgagagcaggatcgtcgagaacaggaaagatggcaacagccgggacagcaagacggat
ggttttgctgtccctgagcccccaaagcgcaagaagagcagatgggacagttaa
DBGET
integrated database retrieval system
