Emydura macquarii macquarii (eastern short-necked turtle): 137153563
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Entry
137153563 CDS
T11697
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
emq Emydura macquarii macquarii (eastern short-necked turtle)
Pathway
emq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
emq00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
137153563 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
emq00536
]
137153563 (COL3A1)
Glycosaminoglycan binding proteins [BR:
emq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137153563 (COL3A1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
137153563
NCBI-ProteinID:
XP_067405147
LinkDB
All DBs
Position
Unknown
AA seq
1451 aa
AA seq
DB search
MTSFVQKVTLLILAVFQPSVILAQQDAACTHLGQVYADRDVWKPEPCQICVCDSGSVLCD
DIICDDQDLDCPTGPEIPFGECCPVCPQPAPSERPSTSPGTVAQGPKGDPGPPGSPGSPG
QPGSPGSPGQPGICRSCPPINGVNYSPQYDSYDVKAGGGGPGMPGPPGLPGHQGSPGQAG
PPGPPGPHGYQGSPGEPGQPGPAGPPGPQGLLGPAGPPGKDGEFGRAGRPGERGLPGPAG
HKGPPGMPGFNGMKGHRGFDGRDGAKGDSGAPGLKGENGLPGENGAPGPMGPRGPTGERG
RQGAPGTAGARGNDGTPGASGQPGPIGPPGTAGFPGTPGAKGEAGAPGSPGSDGTPGLRG
EPGQQGHAGASGTSGTPGRDGNPGSKGETGPAGIPGAPGLSGARGPPGPAGTNGIPGQRG
PSGEPGKNGAKGEPGARGERGENGIPGASGPPGEEGKKGANGEPGTNGIPGTPGERGSPG
FRGLPGGNGLPGEKGPAGERGGPGIAGARGAPGEPGRDGGPGLPGMRGLTGSPGSPGNDG
KSGPPGNQGESGRPGPPGQSGPRGQPGVMGFPGPKGNEGAPGKNGERGSPGPPGAQGLPG
KSGDAGAPGPPGLAGPSGEKGEAGLPGPSGFQGLLGPAGPPGENGKPGEAGQRGENGVPG
PPGSKGENGLPGERGPQGLPGSSGARGGIGPPGPEGSKGPVGAPGPPGGVGPSGLQGMPG
ERGANGNPGPKGDKGEPGGRGGDGFPGKDGPRGSAGPIGPPGPAGPHGDKGEPGAAGPPG
PTGVRGGPGERGEQGPPGPAGFPGAPGQNGEPGGKGERGPGGERGETGPPGAAGPPGGPG
ATGPPGSQGGKGERGAPGSPGSSGFPGGRGLPGPPGNNGNPGPSGNAGSPGKDGPPGPAG
STGPAGSPGAAGPRGEPGPAGEKGSPGTRGETGSPGSPGLQGIAGQRGIAGISGPSGRPG
APGLSGPKGEDGKPGSNGSPGERGAPGLQGPPGLSGSPGESGRDGNPGSDGLPGRDGSPG
PKGDRGENGGPGAPGTPGHPGPAGNIGPAGKGGERGHPGPSGPVGPPGPAGTRGAPGVQG
TRGDKGETGERGSNGIKGHRGFPGNPGSPGPPGPLGPQGANGSPGSMGARGPPGPAGPHG
KDGTSGYPGPIGPPGPRGNRGESGSAGSPGPPGPAGPPGPPGAPGPCCRGGPDGPDEKGP
SSYYYRDEPAENKINMNDILSSMKSVNSQIENIISPDGSRKNPARNCRDLKFCHPELSSG
EYWIDPNQGCKMDAIKVYCNMETGETCINANPSSVPRKNWWTSSGAEKKHIWFGESMNGG
FQFSYGDAELPEDVSDVQMAFLRMLSSRASQNITYHCKNSIAYMDQASGNVKKALKLMSS
TESEFKAEGNSKFTYTVLEDGCTTHTGEWGKTVFEYRTRKTMRLPVVDIAPMDIGGADQE
FGVDIGPVCFL
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgacgagctttgtgcaaaaagtaactttgctcattcttgccgtgtttcaaccctcagtt
attttggcacaacaagatgcggcatgtacacatcttgggcaagtgtatgctgacagggat
gtttggaaaccagaaccatgccaaatctgtgtgtgtgactcaggatctgtcctctgtgat
gacatcatttgtgatgatcaggatttagattgtcccaccggtccagagattccatttgga
gaatgttgccctgtttgtccacagccagcaccttctgaacgaccatctacttctcccggt
actgttgcccaaggccccaagggagaccctggtcctcctggttcacctggatcccctgga
caaccaggcagtcccggctctcctggccagcctgggatctgtcggtcttgcccacctata
aatggagtcaattattctcctcagtatgactcctatgatgtcaaggctggtggtggtgga
cctggtatgccgggaccccctggcctacctggtcatcaaggttcacccggccaagctggt
ccaccaggcccgcctggccctcatggataccaaggttcccctggtgagcctggacaacct
ggccctgctggacctccaggcccccaaggattactaggcccagctggtcccccaggaaaa
gatggagaatttggaagagcaggcagacctggtgagcgtggattacccgggccagcgggc
cacaaaggaccccctggcatgcctggattcaatggaatgaaaggtcacagaggctttgat
ggacgagatggtgccaaaggtgattctggtgctcctggtctgaagggtgaaaatggtctt
cctggagaaaatggagcacctgggccaatgggtccaagaggtccaactggtgaaagagga
agacaaggagcacctggtactgctggggcccgtggtaatgatggtactccgggagcatct
ggacaacctggtcccataggccctcctggaactgcaggatttccaggtactccaggtgct
aagggtgaagctggtgctcctggttccccaggctctgatggtacccctggactaagagga
gaacctggccaacaaggtcatgctggtgcatctggtacttctggcactcccggaagagat
ggaaacccaggttctaaaggtgaaacgggccctgctggtattcctggtgctcctgggctg
agtggagcccgtggcccccctggccccgcaggtactaatggaattcccggacaaagaggc
ccatcaggtgaacctggtaagaacggtgcaaaaggagagccaggcgcacgaggagagcgt
ggtgaaaatggtattccaggtgcttctggtcctcctggtgaagaaggcaaaaagggtgct
aatggtgagccaggcacaaatggcatacctggaacaccaggagaaaggggttcccctggt
ttccgtggcctacccggtggtaatggacttccaggagaaaagggtccagctggtgaacgt
ggtggtccaggcattgcaggtgcaagaggagctccaggagaacctggacgtgatggtggc
cctggtcttccaggaatgagaggtttgacaggaagtccaggaagcccaggaaatgatggc
aaatccggccctccaggtaatcagggcgaatctggccgacctggtcctccaggccaatca
ggtccacgaggtcaaccaggtgtgatgggtttcccaggtcctaagggtaatgagggtgca
ccaggtaaaaatggagaaagaggtagccctggaccccctggcgcacagggtcttcctgga
aagagtggtgatgctggtgcaccaggtcctccaggacttgcgggtcctagtggtgaaaaa
ggagaggcaggattaccaggcccatctggcttccagggattactcggtcctgcaggacca
cctggagagaatggaaagcctggagaagcaggacaaagaggtgaaaatggagtccctgga
cccccaggtagtaagggtgaaaatggtctcccaggtgaacgtggtccacaaggtcttcca
ggttcctcaggagcaagaggtggaataggtcctcctggcccagaaggcagcaagggtcct
gttggtgctcctggccctcctggtggtgtcggaccatctggtttacagggaatgccaggc
gagagaggcgctaatggaaatcctggacccaaaggagataagggagagcctggtggcaga
ggtggtgatggctttcctggtaaagatggaccaaggggttctgcaggtcccattgggccc
ccaggtccagctggtccacacggagataagggagaacctggtgcagctggacccccaggt
cctacaggtgtccgtggtggtcctggtgaacgaggtgaacaaggtcctccagggcctgct
ggtttccctggagcccccggacaaaatggggaacctggtggaaaaggagaaagaggccct
ggtggtgaaagaggtgaaactggtcccccaggagcagcaggtcctccaggaggccctggt
gcaacaggtccacctggttcccaaggaggaaaaggagagcgtggtgctccaggcagcccc
ggttcatctggtttcccgggtggtagaggcctgcctggtccccctggtaataatggcaat
ccagggccatctggtaatgctggttctcccggcaaggatggtcctcccggtccagcgggt
agcactggtccagctggcagccctggagctgctggtcctagaggtgagcctggcccagca
ggtgaaaaaggttcaccaggtacacgaggagaaacggggtcgccaggttctccaggcctc
caaggtatagctggtcaacgtggtattgcggggatatcaggcccttctggcagaccaggc
gctcctggcctatctggcccaaagggtgaagatggtaaaccaggaagcaatggtagccca
ggagaacgtggtgctccaggtctacaaggtcctcctggtctaagtggctcacctggagaa
tctggcagagatggaaaccctggatcagatggcttgccaggtcgtgatggatccccagga
ccaaagggcgatcgtggtgaaaatggtggtccaggtgcacctggtacccctggtcatcct
gggcccgcaggaaacattggtccagctggaaaaggaggtgaaagaggacatccgggtccc
tctgggcctgttggccctcccggtcctgctggtacgcgtggtgctcctggtgtccaaggt
actcgtggtgacaaaggtgaaactggtgagcgtggcagcaatggcattaagggtcacaga
ggatttcctggtaacccaggttcccctggtccccctggtcctctgggtccacaaggtgca
aatggaagcccaggatctatgggtgcaaggggtccccctggcccagctggtcctcacgga
aaggatggtacaagtggttacccaggtcccataggtcctccaggccctcgtggtaatcga
ggtgaaagtgggtctgcgggttcacctggcccccctgggcccgctggacctcctggcccc
cctggagctcctggtccatgctgtcggggagggcctgatggccctgatgaaaaaggacca
tcatcatattactatagagatgagccagctgaaaacaagatcaatatgaacgatatctta
tcttcaatgaaatcagttaacagccaaatcgaaaacatcattagccctgatgggtcccgg
aagaacccagctcgtaactgcagagacctgaaattctgccatccagaactcagtagtgga
gagtactggattgatcctaaccaaggttgtaagatggacgctataaaagtatactgtaat
atggaaactggtgagacatgcatcaatgctaatcccagtagcgtgccacgtaaaaactgg
tggaccagttcaggagctgaaaagaaacacatctggtttggagagtctatgaatggtggc
ttccagttcagctatggagatgcagagcttccagaagatgtttcagatgtgcagatggca
ttccttagaatgctctctagccgtgcctctcagaacatcacttaccactgcaagaacagc
attgcttacatggatcaggccagtggaaatgttaagaaagctctgaaactgatgagttcc
actgagagtgagttcaaggctgaaggaaacagcaaattcacatacaccgttctggaagat
ggttgtactacgcacactggtgaatggggtaagacagtctttgaatacagaacacgcaag
accatgaggttgcctgtggtggatattgctcccatggatattggtggtgctgatcaggaa
tttggtgtggacattggcccagtctgcttcttataa
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integrated database retrieval system
