Emydura macquarii macquarii (eastern short-necked turtle): 137161154
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Entry
137161154 CDS
T11697
Symbol
SKIC2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
emq Emydura macquarii macquarii (eastern short-necked turtle)
Pathway
emq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137161154 (SKIC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emq03019
]
137161154 (SKIC2)
Enzymes [BR:
emq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137161154 (SKIC2)
Messenger RNA biogenesis [BR:
emq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137161154 (SKIC2)
mRNA degradation factors
3'-5' decay
Ski complex
137161154 (SKIC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
137161154
NCBI-ProteinID:
XP_067416357
LinkDB
All DBs
Position
Unknown
AA seq
1259 aa
AA seq
DB search
MERMKLPPRGPLELPLAALELGCAGRFELITRPEGPAGDTFPLCTLPHGLPPHAMDLASE
LERRFLASPEWLPLHRFQRAHRVWPREKDVQSLFQTDASPVHATLRAERDPTTGQILAFR
EAPLDNMGLSAKNSLSFQRAPGPPAQALRGSSTNYPFWPGGMDEPSLEQISAKDHLEEDV
DFENDLLTVPPGWKKGVDFKPQAAALKAAPGLLPLPGLLGALDAFELGGSSDEEEKRKLK
GKGGKEEETPPAPPAALQRADSLEELVLKEVTPELQPPPQAAPLQPPKEQWAIPVDVSSP
VDDFYKRIPDPAFRWPFEPDVFQKQAILHLEQRRSVFVAAHTSAGKTVVAEYAIALAQKH
MTRTIYTSPIKALSNQKFRDFKSTFGDVGLLTGDVQLHPDASCLIMTTEILRSMLYNGSD
VIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVNIILLSATVPNTLEFADWIGRIKR
KQIYVISTVRRPVPLEHHLYTGNSQKTQHELFLLVDARGNFLTKGYYAAVEAKKERTSKH
AQTFGAKQPLHPGAGLGQDKSVWLSLIDALRKRDQLPVVAFTFSRARCDDNAAALTTVDL
TTGAEKSEVHVFFQKCIARLKGSDRQLPQVLHMVELLKRGIGVHHSGILPILKEVVEMLF
SKGLVKILFATETFAMGVNMPARTVVFDSVRKHDGSGFRDLLPGEYIQMAGRAGRRGLDT
TGMVIILCKTHVPDMADLHRMMLGKPTQLQSQFRLTYTMILNLLRVEALRVEDMMKRSFS
EFHSRKDSQAHEHAIAQLSRRLAALEEVETGGQLGDLPEYCRAVQEMQQTRRLIQRRIVE
SPSGLKTLAPGRVVIVNNQAHRNALGVILQVSSDAATRTFTTLVLCEKSPEGGTPAGGAG
GDSPTPEVPFPDDLLLNKLFLPEGPCGHAVEKLGPCDIAVITAKALRVNAERILEDVKKR
QMPRFRSDPPGPSAVQAAQELLRLAEGGAGGLPRLDPVGTLQLKELEVVEGAVRLRRLEE
ALPGFQCVHSPRFPQQYLRLAERLRLRAELDHLRFLLSDQSLLLLPEYQQRVEVLRALRY
VDAAGAVQLAGRVACEISSHELLLTELVFDNLLTELRPEESVALLSCLVCQGRSQAEPQL
PSVLRQGMERIRAVAERIALLQRECGLRESVEDFVAQYNFGLVEVVYEWARGVPFAEIAR
LTDVQEGIIVRCIQRLDETCRDVRNAARVIGEPTLHAKMEEASNLIKRDIVFAASLYTQ
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggagagaatgaagctgcccccccgggggcccctggagctgccgctggccgcgctggag
ctgggctgcgccggccggttcgagctcatcacccgcccggaggggccggcgggggacacg
ttcccgctctgcacgctgccccacgggctgcccccccacgccatggacctggcctccgag
ctggagcggcgcttcctggccagccccgagtggctgcccctccaccgcttccagcgggcc
cacagggtctggccccgggagaaggacgtgcagtcgctgttccagacggacgccagcccc
gtgcacgccacgctgcgggcggagcgggaccccaccacgggccagatcctggccttcaga
gaggcgccgttggacaacatgggtctgtcggccaagaactcgctctccttccagcgggcg
ccggggccccccgcccaggccttgcggggcagcagcaccaactaccccttctggccaggc
gggatggacgagcccagcctggaacagatcagcgccaaggaccacctggaggaagacgtc
gactttgagaatgacttgctgacggtgccaccaggctggaagaaaggggtggacttcaag
ccgcaagctgcggcgctcaaggctgccccagggctgctgcccctgcccggcctgctgggg
gcgctggacgccttcgagctggggggctccagcgacgaggaggagaagaggaagctgaag
gggaaagggggaaaggaggaagagacgcccccggccccccccgccgccttgcagagggca
gacagcctggaggagctggtgctgaaggaggtgacccctgagctccagccgcccccccag
gctgcgcccctccagccccccaaggagcagtgggcgattcctgtcgacgtctcctccccc
gtagatgacttctacaaacgcatccctgacccggccttccggtggcccttcgagccggac
gtcttccagaaacaggccatcctgcacctggagcagcgccgctcggtcttcgtggccgcg
cacacctcggcgggcaagacggtggtggccgagtacgcgatcgccctggcccagaagcac
atgaccaggaccatctacacctcccccatcaaggctctgtccaaccagaagttccgcgat
ttcaagagcaccttcggggacgtggggctgctgacgggcgacgtgcagctgcaccccgat
gcctcctgcctcatcatgaccaccgagatcctgcggtccatgctgtataacggctcggac
gtgatccgggatctggagtgggtgatcttcgacgaggtgcactacatcaacgacgccgag
cgcggcgtggtgtgggaggaggtgctgatcatgctgccggatcacgtcaacatcatcctg
ctcagcgccaccgtccccaacacgctggagttcgccgactggatcgggcggatcaagcgg
aagcagatctacgtgatcagcaccgtgcggcggccggtgcccctggaacatcatctctac
accggcaacagccagaagacgcagcacgagctgttcctgctcgtcgacgcccgcggcaac
ttcctcaccaaggggtactatgcagcggtggaggccaagaaggagcgcaccagcaaacac
gcccagaccttcggggccaagcagccactgcacccgggtgctgggctgggccaggacaag
agcgtgtggctgtcgctcatcgacgcgctgcgcaagcgggaccagctgcccgtggtggcc
ttcaccttctcccgcgcccggtgcgacgacaacgcggccgcgctcaccaccgtcgacctg
accacgggcgccgagaagagcgaggtccacgtcttcttccagaagtgcatcgcccgcctc
aagggctccgaccgccagctgccccaggtgctgcacatggtggagctgctgaagcggggc
atcggggtgcatcacagcgggatcctgcccatcctcaaggaggtcgtggagatgctcttc
agcaaagggctggtcaagatcctcttcgccaccgagaccttcgccatgggggtgaacatg
ccagcccgcaccgttgtcttcgactccgtccgcaagcacgacggctccggcttccgcgac
ctgctgccaggcgagtacatccagatggccgggcgggccgggcgccgggggctggacacc
acggggatggtcatcattctctgcaagacccacgtgcctgacatggccgacctgcaccgc
atgatgctggggaagccgacccagctgcagtcccagttccgcctcacctacaccatgatc
ctcaacctgctgcgggtggaggcgctgcgggtggaggacatgatgaaacgcagcttctcc
gagttccacagtcgcaaggacagccaggcccacgagcacgccatcgcccagctgagccgc
cggctggccgccctggaggaggtggagacgggcgggcagctcggggacctgccggagtac
tgccgggccgtgcaggaaatgcagcagacgcgtcgcctcatccagaggcggatcgtggag
tcgcccagcgggttgaagacactggcccccggccgcgtggtgattgtcaataaccaggcc
cacaggaacgccctgggggtgatcttacaggtctcctccgatgccgccacccggacgttc
accaccctggtgctgtgtgaaaagagccccgaggggggaaccccagcaggtggggcggga
ggggacagccccaccccggaggttcccttccctgatgacctgctgctcaacaagcttttc
ttgccggaaggcccctgtggtcatgccgtggagaaactggggccctgcgacattgcggtg
atcacggccaaggcgctgcgggtgaacgccgagcgcatcctggaggacgtcaagaagaga
cagatgccgcgattcaggagcgacccccccggcccctcggctgtgcaggcggcgcaggag
ctgctgcggctggcagaggggggtgccggggggctgccccgcctggatccggtgggcacc
ctgcagctgaaggaactggaggtggtggagggcgccgtgcggctccggcgcctggaggag
gcgctgcccggtttccagtgcgtccacagcccccgcttcccccagcagtacctgcggctg
gccgagcgcctgcggctgcgggcagagctggaccacctgcgcttcctgctgtccgaccag
tcgctgctgctgctgcctgagtaccagcaacgggtggaggtgctgcgggcactgcgctac
gtggacgccgccggggccgtgcagctggccgggcgcgtggcctgcgagatcagcagccac
gagctgctgctgacggagctggtgttcgacaacctgctgacggagctgcggcccgaggag
agcgtggccctgctcagctgcctggtctgccagggccggagccaggccgagccccagctg
cccagcgtcctgcgccagggcatggagcggatccgggccgtggccgagcgcatcgccctg
ttgcagcgcgagtgcggtctgcgcgagtcggtggaggattttgtggcccagtacaacttc
ggcctggtggaggtggtgtacgagtgggcccgcggcgtgccctttgcggagatcgcccgg
ctgacggacgtgcaggaggggatcatcgtgcgctgcatccagcggctggacgagacctgc
cgggacgtgcgcaacgcggcccgcgtcatcggggagcccacgctccacgccaagatggag
gaggcctccaacctcatcaagagggacatcgtcttcgccgccagcctgtacacccagtga
DBGET
integrated database retrieval system
