KEGG   Emydura macquarii macquarii (eastern short-necked turtle): 137164927
Entry
137164927         CDS       T11697                                 
Symbol
RPA1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
  KO
K07466  replication factor A1
Organism
emq  Emydura macquarii macquarii (eastern short-necked turtle)
Pathway
emq03030  DNA replication
emq03420  Nucleotide excision repair
emq03430  Mismatch repair
emq03440  Homologous recombination
emq03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:emq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    137164927 (RPA1)
   03420 Nucleotide excision repair
    137164927 (RPA1)
   03430 Mismatch repair
    137164927 (RPA1)
   03440 Homologous recombination
    137164927 (RPA1)
   03460 Fanconi anemia pathway
    137164927 (RPA1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:emq03000]
    137164927 (RPA1)
   03032 DNA replication proteins [BR:emq03032]
    137164927 (RPA1)
   03400 DNA repair and recombination proteins [BR:emq03400]
    137164927 (RPA1)
Transcription factors [BR:emq03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    137164927 (RPA1)
DNA replication proteins [BR:emq03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    137164927 (RPA1)
DNA repair and recombination proteins [BR:emq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     137164927 (RPA1)
   MMR (mismatch excision repair)
     137164927 (RPA1)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     137164927 (RPA1)
SSDB
Motif
Pfam: Rep_fac-A_C REPA_OB_2 Rep-A_N tRNA_anti-codon DUF223 DUF8448 CATSPERD-E_C
Other DBs
NCBI-GeneID: 137164927
NCBI-ProteinID: XP_067422081
LinkDB
Position
Unknown
AA seq 613 aa
MSARLSEGAIAAIMQGENHLRPVLQVINTRAIATGSGPPRYRVLMSDGVNTLSSFMLATQ
LNSLIEEERLSAHCICQVNRYIVNNLKDGRRVIILMDLDVLKTADVVGANIGNPVPYNEG
QAQRSLAPAVSPTQSKPQQQNGNSAVGLATTKYHGPSKQFGKTSGASLLSTPGGSQSKVV
PITSLNPYQSKWTICARVTQKGQVRTWSNSRGEGKLFSIELVDESGEIRATAFNDQVDKF
FPLIELNKVYYFSKGHLKTANKQYTAVKNDYEITFNNETSVIPCDDGQHLPSVQFEFVPI
SDLENTSKDSIVDIIGVCKNYEDITKITVKSSNREVSKRNVYLMDTSGKMVTATLWGDEA
ERFDGSRQPVVAIKGARVSDFGGRSLSVLASSTVVVNPDSPEAFKLRGWFDSEGQHLECT
SISDMRGGPTPGGNTNWKTLYEAKSENLGQGDKADYFSCVGTVVFLRKDNCMYQACPSQD
CNKKVIDQQNGLYRCEKCDREFPNFKYRMILAVNIADCQENQWVTCFQESAEVILGQNAA
FLGELKEKNEQAFEEVFQNANFSSYEFRIRVKLETYNDESRIKATALDVKPVNHKEYSKR
LIMNIRKNAVQLG
NT seq 1842 nt   +upstreamnt  +downstreamnt
atgagcgcgcggctgagtgagggggccatcgcggccataatgcagggagagaaccattta
aggcctgttctccaagtcattaacacccgtgcaatcgccacaggaagtgggccacctcgt
tatcgtgtgctgatgagcgatggggtgaacacactctcctctttcatgttggctacacaa
cttaactctctaattgaagaggagcgcttgtctgcccactgtatctgccaggttaacaga
tacattgttaacaacctgaaagatggaaggagagtgattatattgatggatttagatgtt
ctgaaaactgctgatgtggttggtgcaaatattggcaatccagtaccctacaacgaagga
caagcgcaacgttccttagctccagcagtcagcccaacacagagcaaaccacagcaacag
aatgggaattcagcagtaggtctcgctactactaagtaccatggcccctcaaagcagttt
ggtaaaacaagtggtgccagcctcttgagcacacctggtggatcacagtctaaagtggta
ccaattaccagtctgaacccataccaatccaagtggaccatttgtgctcgtgttacccaa
aaaggccaggttcgcacatggagcaactcccgtggtgaaggaaagctgttctctatagag
ctggttgatgaaagtggtgagattagagctactgctttcaatgatcaagtggacaagttc
tttccactcattgaattgaacaaggtgtattacttcagtaaaggccatctgaagacagct
aacaagcagtacacagctgtgaaaaatgactacgagattacattcaataatgagacttca
gttataccctgtgatgatggtcagcatcttccttcggttcagttcgagtttgtgcccatc
tctgacttggagaacacatccaaagactcaattgtcgacataattggagtctgtaaaaac
tacgaagatatcactaaaattacagtgaaatctagcaatagggaggtgtccaaaaggaat
gtgtatttgatggatacatctgggaagatggtgacagctactctgtggggagatgaggct
gaaagatttgatggttctagacaacctgtggtagcaatcaaaggagccagagtgtccgat
tttggtggccggagtctctctgtcctggcctcgagcacagtcgtggtgaacccagatagt
ccagaggcgtttaagctccgaggatggtttgactctgaagggcagcatttggaatgtacc
tcaatctctgatatgagaggtggaccaacacctgggggaaataccaactggaaaactttg
tatgaggccaaatctgaaaatttggggcaaggagataaggcagattattttagctgtgtg
ggcacagtggtattccttcgcaaagataactgcatgtatcaggcatgtccctctcaggac
tgcaataagaaagtgatagaccaacaaaatggactgtatcgctgtgagaaatgcgatcgt
gagttccccaacttcaagtatcgcatgatccttgcggtgaacattgcagactgtcaggag
aatcaatgggtgacttgttttcaggaatcagcagaggtcattcttgggcaaaatgctgct
ttccttggagaactgaaagaaaagaatgagcaggcatttgaggaagtcttccaaaatgcc
aacttcagctcatatgagttcaggatcagagtcaagctggagacttacaatgatgaatct
cgtattaaggctacagcgttggatgtgaagcctgtgaatcacaaagaatacagcaagagg
ctgatcatgaacatcaggaaaaatgcagtacaactaggatga

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