Emydura macquarii macquarii (eastern short-necked turtle): 137166725
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Entry
137166725 CDS
T11697
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
emq Emydura macquarii macquarii (eastern short-necked turtle)
Pathway
emq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
137166725 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emq03019
]
137166725 (MTREX)
03041 Spliceosome [BR:
emq03041
]
137166725 (MTREX)
03009 Ribosome biogenesis [BR:
emq03009
]
137166725 (MTREX)
03016 Transfer RNA biogenesis [BR:
emq03016
]
137166725 (MTREX)
Enzymes [BR:
emq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
137166725 (MTREX)
Messenger RNA biogenesis [BR:
emq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
137166725 (MTREX)
Spliceosome [BR:
emq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
137166725 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
137166725 (MTREX)
Ribosome biogenesis [BR:
emq03009
]
Eukaryotic type
Pre-60S particles
Helicases
137166725 (MTREX)
Transfer RNA biogenesis [BR:
emq03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
137166725 (MTREX)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
nSTAND3
Motif
Other DBs
NCBI-GeneID:
137166725
NCBI-ProteinID:
XP_067424686
LinkDB
All DBs
Position
Unknown
AA seq
1035 aa
AA seq
DB search
MADAFGDELFSVFEDDAAASGAKKKGKAAAAEAASQAGKRSDGKSPAGSTNIPGKTKREV
EVDSTEDAVFGKKPKIEDVAEDINLADLMPKVKVQAVETVEGCTHEVALPANEDFIALKP
RSGKAAKEYPFILDAFQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIF
TSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVA
WVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVI
YTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGG
TKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNA
IDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTI
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNK
LEQQYNSIEIPNEESVVIYYKIRQQLAKLGKEIEEYIHKPKYCLPFLQPGRLVKVKNEDD
DFGWGVVVNFSKKSNVKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPDEKGEMQ
VVPVLVHLLSALSSVRLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKD
QGLKKVIQKIEAFEHRMYSHPLHNDSSLETVYKLCERKAQIAVAIRTAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATA
LLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLM
DVVYTWANGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcttttggagacgagctgttcagcgtgttcgaggacgatgccgccgcctct
ggggccaagaagaagggcaaagcagccgcggccgaggcggccagccaggcggggaaacgc
tcagatggcaaatctccagcaggctctactaacataccagggaaaaccaaaagagaggta
gaagttgatagcacagaggatgccgtttttggaaagaaacccaagatagaggatgttgca
gaagatattaatctggcagacctgatgccaaaagtaaaagtgcaagctgttgagactgtt
gaaggttgtacacatgaggttgcacttcctgcaaatgaagacttcatagccctgaaacca
agaagtggaaaagctgccaaggaatatccattcattcttgatgcttttcaaagagaagcc
attctttgtgtggataacaatcaatctgttttagtgtcagctcatacgtcagctggcaaa
actgtgtgtgcagagtatgcaattgccttggctttgagggagaaacagcgtgtgatattt
accagtcccattaaagctctgagtaaccagaagtatcgtgagatgtatgaggaatttcaa
gatgttggtttgatgactggggatgtcaccattaatcctacagcttcttgtcttgtaatg
acaacagagattttgagaagtatgctctacagaggttctgaggttatgcgagaagttgcc
tgggttatatttgatgaaatccattatatgagagactcagaacgtggtgtggtttgggag
gagactattatattgctccctgacaatgttcactatgtgtttctttctgccactattccg
aatgcccgccaatttgctgaatggatttgccatcttcataaacagccttgccatgtgatt
tacacagactatcgacctactcctctgcaacattatatctttccagcagggggagatgga
ctccaccttgtggttgatgaaaatggtgatttcagagaagataactttaacacagcgatg
caagtacttagagatgcaggtgacttagcaaaaggggaccagaaaggcaggaaaggagga
acaaaaggaccatcaaatgtatttaagatagtgaaaatgatcatggaaaggaatttccaa
cctgtaattattttcagtttcagtaagaaagattgtgaagcctacgcacttcagatgaca
aaattagacttcaacacagacgaagaaaaaaagatggttgaagaagtatttaataatgca
attgactgtctgtctgatgaagataagaagcttcctcaggttgagcatgtgcttcctctt
ttgaagcgaggaattggcatccatcacggtggtttgcttcctattttaaaggaaaccatt
gaaattcttttttctgaaggattaataaaggccttatttgcaactgagacctttgctatg
ggaattaacatgccagccaggacagtgctattcacaagtgcccgcaaatttgatgggaaa
gatttcagatggatctcctcaggtgaatatattcagatgtctggtcgtgcaggacgtcga
ggtatggatgacagaggaatagtaattcttatggtggatgagaagatgagcccgacaatt
ggcaaacagcttcttaagggctcagctgatcctctaaacagtgcttttcacttgacgtac
aacatggtattgaacttgctccgagtagaggaaattaaccctgaatacatgttagaaaaa
tccttctaccagtttcaacactacagagctattccaggagttgtagaaaaggtaaataag
ttggaacaacagtacaacagcatagaaattccaaatgaggaaagcgtggtcatttactat
aaaatccgacagcagcttgctaaactgggtaaagaaattgaagaatacattcacaagccg
aaatactgcttgccatttttacagccaggcaggctggtaaaggtaaaaaatgaagatgac
gattttggttggggagtggttgttaacttctccaagaaatcaaatgtgaagcctaactct
ggtgagctggacccattatatgtggttgaagtcctgttacactgcagtaaagagagtttg
aaaaattctgctactgaggctgcaaagccagcaaagcctgatgagaaaggagagatgcag
gttgttcctgttttggtgcatcttctctcagctctaagcagtgtccgactttacataccc
aaagacctgaggcccatcgacaataggcaaagtgtgttaaaatctatacaggaagtacag
aagcggttccctgatggagtaccattattggaccctattgatgacatgggcatcaaagac
caaggactgaaaaaagtcatccaaaaaatagaggcttttgagcacaggatgtattcacat
ccacttcacaatgattccagtttggagactgtgtataagctttgtgaaagaaaagcacag
attgcagtggctattagaacagcaaagcgagaactgaagaaagccagaactgtcttacaa
atggatgagctcaagtgccgcaaacgtgttttgagaagattgggttttgccacatcttct
gatgtcatagagatgaaagggcgagttgcttgtgaaatcagcagtgctgatgaactgctc
ctgacagaaatgatgtttaatgggcttttcaatgacttatctgcagaacaagcgactgca
ttactaagctgctttgtttttcaagaaaattccagcgaaatgcccaaattgactgagcaa
ttggcaggaccacttcgccaaatgcaggaatgtgctaaaagaattgccaaagtttcagca
gaagctaaattggaaattgatgaggaaaattacctaaactccttcagacccaacctgatg
gatgtagtatacacatgggcaaatggagctacttttgctcacatctgcaaaatgacagat
gtctttgaaggtagcataattcgttgtatgagaaggttagaagaattgcttcgacagatg
tgtcaagcagcaaaggccataggaaacacagagcttgaaaataagtttgcagaaggaatt
acaaaaatcaagagagacattgtgtttgctgccagcctttacctctaa
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integrated database retrieval system
