Erythrobacter mangrovi: HQR01_13200
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Entry
HQR01_13200 CDS
T06812
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
emv
Erythrobacter mangrovi
Pathway
emv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
emv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HQR01_13200 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emv03021
]
HQR01_13200 (rpoC)
03400 DNA repair and recombination proteins [BR:
emv03400
]
HQR01_13200 (rpoC)
Enzymes [BR:
emv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HQR01_13200 (rpoC)
Transcription machinery [BR:
emv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HQR01_13200 (rpoC)
DNA repair and recombination proteins [BR:
emv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HQR01_13200 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
RnfC_N
YqfD
Motif
Other DBs
NCBI-ProteinID:
QKG72246
UniProt:
A0A7D4BBW4
LinkDB
All DBs
Position
2640742..2645070
Genome browser
AA seq
1442 aa
AA seq
DB search
MNELTKFTNQLAKPETFDEIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLEAQDEYGEDAFSAS
IGAEAVKVMLMDLDLEQEKEDLLQELATTKSALKPKKIIKRLKVVESFIESGNRPEWMIL
EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMERQEKTPEFTENDKGEKVEKLQMF
SDMAEVHQALEIKAVTLHTKIIARVPQADESGKVSMVRFETTPGRMLIGECLPKNHKVPF
DIVNRLLTKKDIADVIDEVYRHTGQKDTVLFADAIMALGFRHAFKAGISFGKDDMIIPEE
KIELVEATKSLVADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVADAMMDKIRAKPIGDD
GKEAQINSIYMMSHSGARGSPAQMKQLAGMRGLMAKPSGEIIENPIISNFKEGLNVLEYF
NSTHGARKGLADTALKTANSGYLTRRLVDVSQDCVIIEEDCGTENALEMRAIVQGGSVIA
SIGERILGRTTAEDIVNVATGEVIVPAGTLIDEPMVKAIEEAEVQVAKIRSPLVCEAAQG
VCATCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSHLEAIS
DGKVVYRDMPTIVDKKGRILSLARNGELAVIDAEGREREIHKVPYGTVLMHKDGEKVKEG
ERLAEWDPFSLPIITETSGVVKYQDLIDGTTMEERVDDATGIAQRVVTELRASGRKRKED
LRPRLTLFNDAGDESEAARYMLAPGTTLSVEDGQQVEAGDILARASREAAKTRDITGGLP
RVAELFEARLPKDNAIIAKISGKIEFVREYKAKRKIAIVPEEGDAVEYLIPKTKVIDVQE
GDYVKKGDTLISGSPNPHDILEVLGVEALAEYLVNEIQEVYRLQGVKINDKHIEVIVRQM
LQKVEITDGGDTVLLPGEQVDVEELNEVNAKLPKGKQPATGTPILLGITKASLQTRSFIS
AASFQETTRVLTQAAVEGKKDTLIGLKENVIVGRLIPAGTGAGMNRMRITASSRDAALRA
QWKRAQEAIIAANTAEEEHAAELAQGPEAAIGDDPLAAVEGETHGTDADAGDYLNEEARD
GE
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaaattcaccaaccagctggccaaaccggagactttcgacgagatc
cagatcggcatcgcgtcgcccgagcgcattcgcagctggtccttcggcgagatcaagaag
ccggaaacgatcaactaccgtacgttcaagcccgaacgtgacggtctgttctgcgcgcgc
atcttcggcccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtctgcgaaaagtgcggcgtcgaagtcaccgtgaccaaggtccgccgcgag
cgcatgggccacatcgagctcgccgccccggtcgcgcacatctggttcctcaagtcgctg
ccgtcgcgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgcgtgctctat
ttcgagagctacatcgtcaccgagcccggcctgaccccgctcgagaagttccagctgctg
actgaagacgaactgctcgaagcgcaggacgagtatggcgaagacgccttctcggcctcg
atcggtgccgaagcagtcaaggtcatgctgatggacctcgacctcgagcaggaaaaggaa
gaccttctccaagagctcgcgaccaccaagtccgcgctcaagccgaagaagatcatcaag
cgcctcaaggtcgtcgagagtttcattgaatcgggcaaccgtcccgaatggatgatcctc
gaagtgatcccggtcatcccgcccgaactgcgcccgctggtgccgctcgacggtggccgc
ttcgcgacctcggacctcaacgacctctaccgtcgcgtgatcaaccgcaacaaccgcctc
aagcgcctgatggagctgcgcgcgccggacatcatcgtccgcaacgaaaagcgcatgctg
caggaagcggtcgacgcgctgttcgacaacggccgtcgtggccgcgtgatcaccggcgcc
aacaagcgtccgctcaagtcgctcagcgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggcccg
gaactcaagctgcaccagtgcggcctgcccaagaagatggcgctcgagctgttcaagccg
ttcatctacgcgcgcctcgacgccaagggtctctcgatgaccctcaagcaggcgaagaag
tgggtcgagaaggaacgcaaggaagtctgggacatcctggatgaagtcatccgcgaacac
cccgtcctgctgaaccgcgcgccgacgctccaccgtctcggcatccaggctttcgagccg
gtgctgatcgaaggcaaggcgatccagctccacccgctggtctgcgccgcgttcaacgcc
gacttcgacggtgaccagatggccgtgcacgtcccgctgagcctcgaggcgcagctggaa
gcgcgcgtgctgatgatgtcgaccaacaacatcctctcgcccgccaacggcaagccgatc
atcgttccgtcgcaggacatggtgctgggcctctactacctgtcgatggaacgccaggag
aagaccccggagttcaccgagaacgacaagggcgagaaggtcgagaagctgcagatgttc
tcggacatggccgaggtgcaccaggcgctcgagatcaaggcagttacgctgcacaccaag
atcatcgcgcgcgtgccgcaggccgacgagagcggcaaggtcagcatggtccgcttcgag
accacgccgggccgcatgctgatcggcgaatgcctgccgaagaaccacaaggttcccttc
gacatcgtcaatcgcctgctgaccaagaaggatatcgccgacgttatcgatgaggtctat
cgccacaccggccagaaggacacggtgctgttcgccgacgccatcatggcgctgggcttc
cgccacgcgttcaaggccggcatctccttcggcaaggacgacatgatcatccccgaagag
aagatcgaactggtcgaggcgaccaagtcgctggttgccgactatgagcagcagtaccag
gacggcctcatcacccagcaggaaaagtacaacaaggtgatcgacgcctggagccgttgc
ggcgaccaggtggccgatgccatgatggacaagatccgcgccaagccgatcggcgacgac
ggcaaggaagcccagattaactcgatctacatgatgagccactctggtgcgcgtggtagc
ccggcgcagatgaagcagctcgccggcatgcgcggcctgatggccaagccgtcgggcgag
atcatcgagaacccgatcatctcgaacttcaaggaaggcctgaacgtcctcgagtacttc
aactcgacccacggcgcccgtaagggtctcgcggatacggcgctcaagaccgcgaactcg
ggttacctgacccgccgcctcgtcgacgtgtcgcaggactgcgtcatcatcgaagaggat
tgcggcaccgaaaacgcgctggaaatgcgtgcgatcgtgcagggcggttcggtcatcgct
tcgatcggcgaacgcatcctcggtcgcaccacggccgaagacatcgtcaacgtcgccact
ggcgaagtcatcgtgcccgccggcacgctgatcgacgagccgatggtcaaggcgatcgag
gaagccgaagtgcaggttgccaagatccgttcgccgctggtctgcgaagccgcccagggc
gtctgcgcgacctgctacggtcgtgaccttgcgcgcggtaccccggtcaacatcggcgaa
gccgtgggcgtcatcgcggcgcagtctatcggtgaaccgggcacgcagctgaccatgcgt
accttccacatcggtggtgcggcgcagctcaacgagactagccacctcgaggcgatctcg
gacggtaaggtcgtctatcgcgacatgccgaccatcgtcgacaagaagggtcgtatcctg
tcgcttgcccgcaacggcgagctggcggtgatcgacgccgagggtcgcgagcgcgagatc
cacaaggtgccctacggtaccgtcctgatgcacaaggacggcgagaaggtgaaggaaggc
gaacgcctggcggaatgggatccgttctcgctgccgatcatcaccgaaacctcgggcgtg
gtgaagtaccaggacctgatcgacggtacgaccatggaagaacgcgtcgacgatgccacc
ggtatcgcccagcgcgtcgtcaccgaactgcgtgcctcgggccgcaagcgcaaggaagac
ctgcgcccgcgcctgacgctgttcaacgatgccggggacgaaagcgaagccgcgcgctac
atgctggcgccgggcaccacgctgtcggtcgaggacggccagcaggtcgaagcgggcgac
atccttgcccgtgcgtcgcgcgaagcggcgaagacccgcgacatcaccggcggtctgccg
cgtgttgccgagctgttcgaagcccgcctgcccaaggacaatgcgatcattgccaagatt
tcgggcaagatcgaattcgtccgcgagtacaaggccaagcgcaagatcgcgatcgtgccg
gaagaaggtgatgcagtcgaatacctgatccccaagaccaaggtgatcgacgtgcaggaa
ggcgactatgtgaagaagggtgacaccctgatttccggctcgcccaatccgcacgacatc
ctcgaagtcctgggcgtcgaggcgctcgccgagtacctcgtgaacgaaatccaggaagtc
tatcgactgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatg
ctgcagaaggtcgagatcaccgatggcggcgataccgtgctgctgccgggcgaacaggtc
gacgtcgaggaactcaacgaggtcaatgcgaagctgcccaagggcaagcagccggccacg
ggcaccccgatcctgctgggcattaccaaggcctcgctgcagacccgctccttcatctcg
gcggcctctttccaggagaccacccgcgtgcttacccaggccgcggtcgagggtaagaag
gacacgctgatcggcctgaaggaaaacgtgatcgtgggccgtctcatccccgccggtacc
ggcgcgggcatgaaccgcatgcgcatcaccgcctccagccgcgacgccgcgctgcgcgcg
cagtggaagcgggcgcaggaagcgatcatcgcggccaacaccgccgaggaagagcatgcg
gcggaactcgcccagggccccgaagcggcgatcggcgacgatccgctggcagcggtcgaa
ggcgagacccatggaaccgatgccgacgccggtgactacttgaacgaggaagcccgggac
ggcgaataa
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