Sinorhizobium mexicanum: FKV68_15605
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Entry
FKV68_15605 CDS
T06706
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
emx
Sinorhizobium mexicanum
Pathway
emx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
emx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FKV68_15605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
emx03019
]
FKV68_15605
Enzymes [BR:
emx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FKV68_15605
Messenger RNA biogenesis [BR:
emx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FKV68_15605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_22
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QLL62768
UniProt:
A0A859QZF8
LinkDB
All DBs
Position
3242413..3243930
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AA seq
505 aa
AA seq
DB search
MSTFKELGLSQQILATLAANGFEKPTPIQTQAIPVVLKGHDLIGLAQTGTGKTAAFGLPM
IERLVADGKRADPRNIRALVLAPTRELVNQIAANLKVFVKKTPLKIGVVVGGVSINKQTE
QLARGVDILVATPGRLLDLVNRKAVTLTQGRYLVLDEADQMLDLGFIHDLRKIAKLVPKN
RQTLLFSATMPKQIAELAGEYLTDPLKVEVTPPGKAADKIEQYVHFVPGKDLKTSILKQS
LSDNPDGLSLIFSRTKHGAEKLMKHLDHVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCTPDEIRLLRD
IEKLMGIQIAIASGEAPADQARPSKGRGGRGNGQRHGNGGGHRQEGRPHRERPAREPAAA
PSSFAGDDLLRDERRPPKHDRRDQRQPGHGHHEGRSEGNRNHEGRKHRGRPASKHEGRRQ
RDGQPGNRHESGRGNRRTDNGARQG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
ttgtccacattcaaagagcttggcctctcccagcagattttggcgacgcttgccgccaat
ggttttgagaagccgacgcccatccagacgcaggccattcccgtcgtcctcaagggccac
gacctcatcggtcttgcccagacgggaaccggcaagacggccgccttcggcctgcccatg
atcgagaggctggttgccgacggcaagcgcgccgacccacgcaacatccgcgccctcgtc
ctcgctccgacccgcgagctcgtcaaccagatcgccgccaacctcaaggtcttcgtcaag
aagacgccgctcaagatcggcgtcgtcgtcggtggggtctcgatcaacaagcagaccgaa
cagctcgcccgtggcgtcgacattcttgtcgcgacccccggccgcctgctggacctcgtc
aatcgcaaggcggtgacgctgacccagggccgctatctcgtgctcgacgaggccgaccag
atgctcgacctcggcttcatccacgacctgcgcaagatcgcgaagctggtgccgaagaac
cgccagacgctgctcttctcggcgaccatgccgaagcagatcgccgaactcgccggcgaa
tacctgaccgatccgctcaaggtcgaagtcaccccgccgggcaaggccgccgacaagatc
gagcaatacgtccacttcgttcccggcaaagacttgaagacctcgatcctcaagcagtcg
ctttccgacaatcccgacggcctttcgctcatcttcagccgcactaagcacggcgccgag
aagctgatgaagcatctggaccacgtcggcttcaaggccgcgtcgatccatggcaacaag
agccagggccagcgcgagcgtgcgctgaaggccttccgcgatggtgaaatccgggtgctc
gttgcaaccgatgtcgccgcccgtggcatcgacattccgggcgtcacgcatgtctacaac
tacgacctgccggaagtcccggacgcctacgtccatcgcatcggccgcacggcccgcaac
ggccgcgacggtatcgcgatcgccttctgcaccccggacgaaatccgcctgctccgtgac
atcgagaagctgatgggcatccagatcgccatcgccagcggcgaggcaccggccgatcag
gcgcgtccgtccaagggacgcggcggtcgcggcaacggccagcgtcatggcaacggcggc
ggccaccgacaggaagggcgtccgcatcgcgagcgtccggcgcgcgaaccggcggcagcc
ccgtcgagctttgccggggacgatctgctgcgggacgaacggcgtccgccgaagcacgac
cgccgggatcagcgccagccgggccacggccatcatgaaggccggtcggaaggcaaccgc
aatcacgagggtcggaaacaccgcggccgtccggcatcgaagcacgagggccgacgccag
cgtgacgggcagcccggcaaccgccatgaaagcggccgcggaaaccgtcgtaccgacaat
ggtgctcgccagggctga
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